BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD03FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1621 1546 0.0
>3x_Contig1621
Length = 10398
Score = 1546 bits (780), Expect = 0.0
Identities = 840/854 (98%), Gaps = 5/854 (0%)
Strand = Plus / Minus
Query: 90 gaacaagagaccagcaatgtgtcaccacgcatatgagatcacattacacttgatccattg 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7784 gaacaagagaccagcaatgtgtcaccacgcatatgagatcacattacacttgatccattg 7725
Query: 150 ttaattatatatacgtaaaacgaatctaagctgcagttgaaaaatctttccagattttaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7724 ttaattatatatacgtaaaacgaatctaagctgcagttgaaaaatctttccagattttaa 7665
Query: 210 agtcacgtgcaaaacaaacaacattctttgcctgtaatcattagaagaacatagctcttg 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7664 agtcacgtgcaaaacaaacaacattctttgcctgtaatcattagaagaacatagctcttg 7605
Query: 270 gctgtttacagtagcttgaatttgtgttcaacgctgtggcatatctgtttcaatcacgac 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7604 gctgtttacagtagcttgaatttgtgttcaacgctgtggcatatctgtttcaatcacgac 7545
Query: 330 gatcccgctgccaatgctccagagttatttaattgaacctttgacttctctaaacagagt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7544 gatcccgctgccaatgctccagagttatttaattgaacctttgacttctctaaacagagt 7485
Query: 390 atctctagcctttctttttctgtccgtgcattgactgaaaatttttgggatttgaataag 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7484 atctctagcctttctttttctgtccgtgcattgactgaaaatttttgggatttgaataag 7425
Query: 450 taacgatgagatgagaagcgatgagatgagatgagatgagatgagatgaggtaaatggca 509
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7424 taacgatgagatgagaagcgatgagatgagatgagatgagatgagatgaggtaaatggca 7365
Query: 510 gataacaatcacaaaattactcattagtgtctgctttagtgctcagaatacgactagtga 569
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7364 gataacaatcacaaaattactcattagtgtctgctttagtgctcagaatacgactagtga 7305
Query: 570 tacaagatttatttgttctacggagaaaatgggtaaagtaatgggtggcagcggtcgtaa 629
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7304 tacaagatttatttgttctacggagaaaatgggtaaagtaatgggtggcagcggtcgtaa 7245
Query: 630 acagagacacgatcctttattgaacgatcttgactctcaacatggtaagttgaaaagaca 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7244 acagagacacgatcctttattgaacgatcttgactctcaacatggtaagttgaaaagaca 7185
Query: 690 aggtaagaaaaagatcgatgctaaggatcaaaaaggccatgaagatgaagaatttgtcga 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7184 aggtaagaaaaagatcgatgctaaggatcaaaaaggccatgaagatgaagaatttgtcga 7125
Query: 750 tgcccagcaatctagataaattttgcaattagctagggaacagcaggaagaatttaga-g 808
|||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 7124 tgcccagcaatctagaaaaattttgcaattagctagggaacagcaggaagaa-ttagagg 7066
Query: 809 aagaagacgagcagtctctgcagacattcagccaaggaataaacagattctgtgtggcca 868
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7065 aagaggacgagcagtctctgcagacatccagccaaggaataaacagattctgtgtggcca 7006
Query: 869 actatgcgnatgaagatgatgtanctgaggaa-aagaagcctcaggt-ataac-tatctg 925
|||||||| |||||||||||||| |||||||| | ||||| |||| ||||| ||||||
Sbjct: 7005 actatgcggatgaagatgatgtagctgaggaagaggaagctcaaggtaataacatatctg 6946
Query: 926 actttgaaccggaa 939
||||||||||||||
Sbjct: 6945 actttgaaccggaa 6932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9412
Number of Sequences: 1807
Number of extensions: 9412
Number of successful extensions: 918
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)