BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD03RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig688 1082 0.0
>3x_Contig688
Length = 2555
Score = 1082 bits (546), Expect = 0.0
Identities = 561/566 (99%)
Strand = Plus / Plus
Query: 42 atcatcttcttgactgggatcaactaatatcaaatcaccctccattccagttattcgttt 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1914 atcatcttcttgactgggatcaactaatatcaaatcaccctccattccagttattcgttt 1973
Query: 102 gcaaactctagattgtggatctgtgggcttcatagcaactatacagtctcccatctttaa 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1974 gcaaactctagattgtggatctgtgggcttcatagcaactatacagtctcccatctttaa 2033
Query: 162 gtctcgtccgtccttataccatttcagaacatggacgtaatcgtttactctattcaaggt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2034 gtctcgtccgtccttataccatttcagaacatggacgtaatcgtttactctattcaaggt 2093
Query: 222 cggtaacattgattcacctctcgtttctgtaaactcatagaaatgtgtatgagttatatg 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2094 cggtaacattgattcacctctcgtttctgtaaactcatagaaatgtgtatgagttatatg 2153
Query: 282 tatcaaacaaactgtacgtaccacatagctaccaatattaagccaactcatcactgctaa 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2154 tatcaaacaaactgtacgtaccacatagctaccaatattaagccaactcatcactgctaa 2213
Query: 342 caccaaataatactcggtgttgtggatgttttcccactttccgcactactagttaaatct 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2214 caccaaataatactcggtgttgtggatgttttcccactttccgcactactagttaaatct 2273
Query: 402 tctctggaatactagatttctctcatctcattatatcagcataagttccattttcgaact 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2274 tctctggaatactagatttctctcatctcattatatcagcataagttccattttcgaact 2333
Query: 462 gttgaaatagttcttttggtgagaaatacacgtcgtaatcctcttgacacacggaaagct 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2334 gttgaaatagttcttttggtgagaaatacacgtcgtaatcctcttgacacacggaaagct 2393
Query: 522 ttccatccaataattgtatcgtactgttggcaaaaattccccaacctctgttgaagctag 581
||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||
Sbjct: 2394 ttccatccaataattgtatcgtactgttgtcaaaaattccccaacctctgtttaatctag 2453
Query: 582 tatccttattgatcaaatacgcaatg 607
|||||||||| ||||||||| |||||
Sbjct: 2454 tatccttattaatcaaatactcaatg 2479
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,317
Number of Sequences: 1807
Number of extensions: 13317
Number of successful extensions: 115
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)