BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD04FM1.SCF screened BAC_end
(870 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1661 1423 0.0
>3x_Contig1661
Length = 14612
Score = 1423 bits (718), Expect = 0.0
Identities = 766/779 (98%), Gaps = 4/779 (0%)
Strand = Plus / Plus
Query: 86 acgttccaaacagaaaaaaaaacatctgatacctaccataaaccttccggttcatggtta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4894 acgttccaaacagaaaaaaaaacatctgatacctaccataaaccttccggttcatggtta 4953
Query: 146 tatggcagaacgtttccccaggtccgtttgtcttatatatctgattcagaatcatgaata 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4954 tatggcagaacgtttccccaggtccgtttgtcttatatatctgattcagaatcatgaata 5013
Query: 206 ataataataatatttggctataaaaaccctcgagaaatctaattcaagaaactaaggcaa 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5014 ataataataatatttggctataaaaaccctcgagaaatctaattcaagaaactaaggcaa 5073
Query: 266 gaagaaactaccttttaacaagccaagagaataaaccaatgagataaccgagatagctgg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5074 gaagaaactaccttttaacaagccaagagaataaaccaatgagataaccgagatagctgg 5133
Query: 326 gacgtttgaagaatttcccttaattgatggatcccagaaactgacatttgtgacatttcc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5134 gacgtttgaagaatttcccttaattgatggatcccagaaactgacatttgtgacatttcc 5193
Query: 386 acaagtgacgttggacatattattcagtattcggtatgctatagactatataagagggct 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5194 acaagtgacgttggacatattattcagtattcggtatgctatagactatataagagggct 5253
Query: 446 aattaatatgcgttagtagtgtgtaattccagttttgcaattgtccctttcagccggatc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5254 aattaatatgcgttagtagtgtgtaattccagttttgcaattgtccctttcagccggatc 5313
Query: 506 tggggaaaggaagttttggggacaaaaaaagcggttctaggcgcggttttccgtgtagtc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5314 tggggaaaggaagttttggggacaaaaaaagcggttctaggcgcggttttccgtgtagtc 5373
Query: 566 agcaaaaaaatttgtgcagttatatcggtttatcgtagggagagtaaggacctgaaagga 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5374 agcaaaaaaatttgtgcagttatatcggtttatcgtagggagagtaaggacctgaaagga 5433
Query: 626 tttgtccggatgaaaggctaacggngagaagtcacaagtccgaatggtgtatgggtggcg 685
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5434 tttgtccggatgaaaggctaacggggagaagtcacaagtccgaatggtgtatgggtggcg 5493
Query: 686 atgtttgcctgcttcttgncatttcacatgtgacagatatatgagtcagctggacggttg 745
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5494 atgtttgcctgcttcttgcaatttcacatgtgacagatatatgagtcagctggacggttg 5553
Query: 746 ctgacaaggatgatgactcgacggggggggcgcccgaagggggagaatcgctgtagtcac 805
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 5554 ctgacaaggatgatgactcgacggggggggcgccggaagggggagattcgctgtagtcac 5613
Query: 806 gtgggttagggtttaaatttttggttttgggtttttcgtttttccagggtaaccgtggg 864
|| |||||| |||| ||||||||||||||| |||||||||| |||||||||| ||||
Sbjct: 5614 gt-ggttagtgttt-aatttttggttttgg--ttttcgttttctcagggtaaccctggg 5668
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6624
Number of Sequences: 1807
Number of extensions: 6624
Number of successful extensions: 204
Number of sequences better than 1.0e-20: 1
length of query: 870
length of database: 10,358,551
effective HSP length: 16
effective length of query: 854
effective length of database: 10,329,639
effective search space: 8821511706
effective search space used: 8821511706
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)