BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD04RM1.SCF screened BAC_end
(897 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1399 1179 0.0
>3x_Contig1399
Length = 7157
Score = 1179 bits (595), Expect = 0.0
Identities = 669/683 (97%), Gaps = 8/683 (1%)
Strand = Plus / Plus
Query: 37 tatgaacta-tggaaca-ggtaagatcttgggtagattcgtcgttgacacttacaaataa 94
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tatgaactaatggaacaaggtaagatcttgggtagattcgtcgttgacacttacaaataa 607
Query: 95 tcggattaattaaagaatgtgtccctcattagatttcttttctttatttaactcccatta 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tcggattaattaaagaatgtgtccctcattagatttcttttctttatttaactcccatta 667
Query: 155 ttacaaaaaaaattagtgcaagggaagagtctctcacctcttaacttaaaatgaaaaaga 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 ttacaaaaaaaattagtgcaagggaagagtctctcacctcttaacttaaaatgaaaaaga 727
Query: 215 acaaacgtattcgccataatcatatcatcctcagcctcctattttaacaaactcacacaa 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acaaacgtattcgccataatcatatcatcctcagcctcctattttaacaaactcacacaa 787
Query: 275 cgattcgctctggctttatgaaccttgccaggcgtgtgtttttaagaagaagtttaaccg 334
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 788 cgattcgctctggctttatgaaccttgccaggcgtgtgttttaaagaagaagtttaaccg 847
Query: 335 ttagataagaaaggatgaaaatttgacgatacgttcttattccatgccaccccccccccc 394
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 848 ttagataagaaaggatgaaaatttgacgatacgttcttattccatgcca-cccccccccc 906
Query: 395 cactgttacgtatgtttattgttagagcttatgacctatcgatgactattgttattatct 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 cactgttacgtatgtttattgttagagcttatgacctatcgatgactattgttattatct 966
Query: 455 tatacagatgaaaaatctcttttatttgaattgatttcaaacaacgtattttttatatat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 tatacagatgaaaaatctcttttatttgaattgatttcaaacaacgtattttttatatat 1026
Query: 515 catagtagtcattgacccccctctctttcttatcaatgaagtaaataatattcaatcaat 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 catagtagtcattgacccccctctctttcttatcaatgaagtaaataatattcaatcaat 1086
Query: 575 attccaatttttaaactaactttaataccagacttatcttttgaattgactggtattgtc 634
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1087 attccaatttttaaactaactttaataccagacttatc-tttgaattgactggtattgtc 1145
Query: 635 actactagcattaaatttatgtggattttttaagaaatatataatattatttctattggt 694
|||||||||||| |||||||||| ||||||||||| |||||| |||||| |||||| ||
Sbjct: 1146 actactagcatt-aatttatgtgtattttttaagatatatat-atatta-ctctatt-gt 1201
Query: 695 tccaaagttttacagattttttt 717
| ||||||||||||||| |||||
Sbjct: 1202 tacaaagttttacagatattttt 1224
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,310
Number of Sequences: 1807
Number of extensions: 11310
Number of successful extensions: 100
Number of sequences better than 1.0e-20: 1
length of query: 897
length of database: 10,358,551
effective HSP length: 16
effective length of query: 881
effective length of database: 10,329,639
effective search space: 9100411959
effective search space used: 9100411959
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)