BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD05FM1.SCF screened BAC_end
(896 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1413 1513 0.0
>3x_Contig1413
Length = 8782
Score = 1513 bits (763), Expect = 0.0
Identities = 800/807 (99%), Gaps = 4/807 (0%)
Strand = Plus / Minus
Query: 85 catctcggcaaatcttacgaactttgtgaaaagaatgtgtaatgcgtattcagacggact 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3982 catctcggcaaatcttacgaactttgtgaaaagaatgtgtaatgcgtattcagacggact 3923
Query: 145 tttccagtcagttgccgatttctgtcttaatccggcaacgtattcatcggggaatgagga 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3922 tttccagtcagttgccgatttctgtcttaatccggcaacgtattcatcggggaatgagga 3863
Query: 205 tgtactattagcagatgcaggatcaggtcttggttgctgagatacctcgttgatgctgta 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3862 tgtactattagcagatgcaggatcaggtcttggttgctgagatacctcgttgatgctgta 3803
Query: 265 atttatattgtttgtaattttgttcgacaggttatctcccggcttgttcaattgcaatgc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3802 atttatattgtttgtaattttgttcgacaggttatctcccggcttgttcaattgcaatgc 3743
Query: 325 attgatatggaattgttctggggtcacaccattaggatctaccggtggaatgtctatgat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3742 attgatatggaattgttctggggtcacaccattaggatctaccggtggaatgtctatgat 3683
Query: 385 attcagtgtctgttgaggataatctgtattgctatgttgcacagccccctggtcaatctg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3682 attcagtgtctgttgaggataatctgtattgctatgttgcacagccccctggtcaatctg 3623
Query: 445 ggtggaaggatactgttgttgcttttcaacctctacttggttcacattctcacttggaaa 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3622 ggtggaaggatactgttgttgcttttcaacctctacttggttcacattctcacttggaaa 3563
Query: 505 cttaaaatcattacccatatcatcagaaagtaaggtaccatgtgccctgttttctttccc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3562 cttaaaatcattacccatatcatcagaaagtaaggtaccatgtgccctgttttctttccc 3503
Query: 565 cactggaggaaacataaacccagagttcatgtccaattgtaagttgtggatatctggcag 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3502 cactggaggaaacataaacccagagttcatgtccaattgtaagttgtggatatctggcag 3443
Query: 625 tattggacctttcttattatgatttaaaacaattggaaagcgaattttcgtgacaatagg 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3442 tattggacctttcttattatgatttaaaacaattggaaagcgaattttcgtgacaatagg 3383
Query: 685 ccttttgataaaagcacaattcaacccaaattctcgtattccataaaccttgggaacacg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3382 ccttttgataaaagcacaattcaacccaaattctcgtattccataaaccttgggaacacg 3323
Query: 745 atcaattatgaataacgatctcttaccgcgtagacagcaatttctttctttcactccctt 804
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 3322 atcaattatgaataacgatctcttaccgcgtagacagcaa-ttctttcttccactccctt 3264
Query: 805 atgcagatcattttcatcggtcatctcctactgtttacttcactgaattgttattccttg 864
|||||||||| ||||||| |||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 3263 atgcagatca-tttcatc-gtcatctcctactgttaacttcactgaattgttatt-cttg 3207
Query: 865 atctgggcacatgatacggagtgttcc 891
|||||| ||||||||||||||||||||
Sbjct: 3206 atctggtcacatgatacggagtgttcc 3180
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5790
Number of Sequences: 1807
Number of extensions: 5790
Number of successful extensions: 32
Number of sequences better than 1.0e-20: 1
length of query: 896
length of database: 10,358,551
effective HSP length: 16
effective length of query: 880
effective length of database: 10,329,639
effective search space: 9090082320
effective search space used: 9090082320
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)