BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD05RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1463 0.0
>3x_Contig1642
Length = 16641
Score = 1463 bits (738), Expect = 0.0
Identities = 818/833 (98%), Gaps = 9/833 (1%)
Strand = Plus / Minus
Query: 51 caacagcagtatggttaaacttgaccgtgttgctattactcaggaacttgtagacctacc 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2550 caacagcagtatggttaaacttgaccgtgttgctattactcaggaacttgtagacctacc 2491
Query: 111 ttgttagcagtcttttgaactttttcctcttgtgacattttcaatcctggattatatctt 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2490 ttgttagcagtcttttgaactttttcctcttgtgacattttcaatcctggattatatctt 2431
Query: 171 tcgatcaactgctcgtattcactttgattgacaacaaaggccgcaatatctttcaaatgt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2430 tcgatcaactgctcgtattcactttgattgacaacaaaggccgcaatatctttcaaatgt 2371
Query: 231 tgaagagaacgcgggtcatctttcagcgatagaacaatatctttgagatgtttgctatgg 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2370 tgaagagaacgcgggtcatctttcagcgatagaacaatatctttgagatgtttgctatgg 2311
Query: 291 ctgtaaaataatagctctttagatttcaatgggtccttagtcttcaaaatttcaattttt 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2310 ctgtaaaataatagctctttagatttcaatgggtccttagtcttcaaaatttcaattttt 2251
Query: 351 tttccaaccgcactgagctgttttaataccttgcttcttgccattgcatctaggcccttc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2250 tttccaaccgcactgagctgttttaataccttgcttcttgccattgcatctaggcccttc 2191
Query: 411 tcctgctgttgtctcactaattggatcctattgtatgtcaataaggctatttgtttcttt 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2190 tcctgctgttgtctcactaattggatcctattgtatgtcaataaggctatttgtttcttt 2131
Query: 471 gtatcttgctgtagttgttggattttattgtgcttcgcactacggacaagtgatctcaat 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2130 gtatcttgctgtagttgttggattttattgtgcttcgcactacggacaagtgatctcaat 2071
Query: 531 agtgacttatatgtcgataacgttagctcactcattgtatgatccttaatatattctata 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2070 agtgacttatatgtcgataacgttagctcactcattgtatgatccttaatatattctata 2011
Query: 591 ttatcactgctctgtgagataatgataagtggagatatcctataatgcctattataatat 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2010 ttatcactgctctgtgagataatgataagtggagatatcctataatgcctattataatat 1951
Query: 651 gtcaaggcagagtactctcataacatgctagaatcaccaatctaatacagaactcatcga 710
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1950 gtcaaggcagagtactctcataacatgctagaatcaccaatctaatacagaactcatcga 1891
Query: 711 aacattttttcaacagtcaaatctcttcttaactgtcgattcagatcacgtgaaaccttt 770
|||| ||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct: 1890 aaca-tttttcaacagtcaaatctctctttaactgtcgatccagatcacgtgaaaccttt 1832
Query: 771 ttcacgttttcttctgtaaatcctgaagatatatttcatttccggtaatgatttcgngtt 830
|||||| |||||||||||||| |||||||||||||||||| | |||||||| |||| | |
Sbjct: 1831 ttcacg-tttcttctgtaaat-ctgaagatatatttcattccgggtaatga-ttcgtg-t 1776
Query: 831 tttttttttgtcactctttctttaattttcctccttgttcgcttttttgactg 883
||||||||||||||| ||||||| |||||||| |||||||| |||||||||||
Sbjct: 1775 tttttttttgtcact-tttcttt-attttcct-cttgttcg-ttttttgactg 1727
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,113
Number of Sequences: 1807
Number of extensions: 13113
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)