BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD06FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1749 1635 0.0
>3x_Contig1749
Length = 22923
Score = 1635 bits (825), Expect = 0.0
Identities = 858/865 (99%), Gaps = 3/865 (0%)
Strand = Plus / Minus
Query: 85 gatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaaagagc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20456 gatatcgattgtgataaatttgggtcacacttacaggaaacttggtgaggacgaaagagc 20397
Query: 145 catcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatggtgttc 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20396 catcaaatgctttaagaccgtattagagagtagtaaacctactgccactttatggtgttc 20337
Query: 205 cttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagttttcataa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20336 cttagggtttctatatttaagaatgaaaaaaattgaaaaggcaatcgatagttttcataa 20277
Query: 265 agctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgccttaga 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20276 agctctagcgctggaccaaggtaaccaggcatcaaataaactattgaagactgccttaga 20217
Query: 325 gatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaacattca 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20216 gatcaatgcacatatgataattgatgagaatcaccctatggtaatttcatcgaacattca 20157
Query: 385 aaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattgggaattac 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20156 aaatattccgacgtcacatgtatcaaagaatgataagaaaagaacatcattgggaattac 20097
Query: 445 tagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcacgaggg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20096 tagttttgatcccgtcaccgaggcaaaacggttaaaacaaggtatttcagatcacgaggg 20037
Query: 505 cgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagcttaat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20036 cgattcaatggacattgaacaataaaagtaacatttatattcttgcatatatagcttaat 19977
Query: 565 aggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactctatgcct 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19976 aggaaaagctcgcagttggaaaataacttgctagctttttcaagctgtcactctatgcct 19917
Query: 625 gcgtccccacaggatctttggactctatgttctttctatggctcttggattttctttttt 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19916 gcgtccccacaggatctttggactctatgttctttctatggctcttggattttctttttt 19857
Query: 685 tccctcccgtggatcttccttttctctctggctcctttgaatctaaggattttccagatt 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19856 tccctcccgtggatcttccttttctctctggctcctttgaatctaaggattttccagatt 19797
Query: 745 ctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttggtttagttc 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 19796 ctatggcattctctggcgctgccaaatcactatcctggtgcgaagcctttggttt-gttc 19738
Query: 805 ttcaatttgtccttcgatttaaatttagattttgagtttgcttttggaaccacaactttt 864
||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct: 19737 ttcaatttgtccttcgatttagatttagattttgagtttgctttgggaaccacaactttt 19678
Query: 865 tctgatccacgtagtaattcaaaaccctctttttcag-tttgttacacaaggtttttggt 923
||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||
Sbjct: 19677 tctgatccacgtagtaattcaaaaccctctttttcagttttgttacac-agggttttggt 19619
Query: 924 aaaatcaaaagtatttgcttcggta 948
||||||| |||||||||||||||||
Sbjct: 19618 aaaatcagaagtatttgcttcggta 19594
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8381
Number of Sequences: 1807
Number of extensions: 8381
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)