BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD06RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1294 1459 0.0
>3x_Contig1294
Length = 6938
Score = 1459 bits (736), Expect = 0.0
Identities = 815/832 (97%), Gaps = 8/832 (0%)
Strand = Plus / Minus
Query: 44 cttcatcctcatcatcatcttcaggatcatcttcttgctcagagttgccttcggcatcta 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1734 cttcatcctcatcatcatcttcaggatcatcttcttgctcagagttgccttcggcatcta 1675
Query: 104 ctatatcgaggtttcctctggagatagacacatcttgattgccacctaataatggttttt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1674 ctatatcgaggtttcctctggagatagacacatcttgattgccacctaataatggttttt 1615
Query: 164 tggcagtcttttttacgattgtatttccaagggcatctaactccacctcttcgacttcag 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1614 tggcagtcttttttacgattgtatttccaagggcatctaactccacctcttcgacttcag 1555
Query: 224 caatatcgtcttcggatgatgacaacgatgccgaacttaattcaccattcaaaacatcat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1554 caatatcgtcttcggatgatgacaacgatgccgaacttaattcaccattcaaaacatcat 1495
Query: 284 gctcttccaccattcttgaagatccattgaacattccttgaccattatcacttccatcct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1494 gctcttccaccattcttgaagatccattgaacattccttgaccattatcacttccatcct 1435
Query: 344 cctcttcatcgctgtcttcaaattctttttcaaatctgcgatgcaacttattgtagtatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1434 cctcttcatcgctgtcttcaaattctttttcaaatctgcgatgcaacttattgtagtatt 1375
Query: 404 cagttccattattgtcatcttcggatgattcgtgccagttctcttgcttcttggacatcg 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1374 cagttccattattgtcatcttcggatgattcgtgccagttctcttgcttcttggacatcg 1315
Query: 464 gaagacgtgcatcaagattaatcttatcataattgcaacaccaaggtgatagattcaatt 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 gaagacgtgcatcaagattaatcttatcataattgcaacaccaaggtgatagattcaatt 1255
Query: 524 tgcttttgaatataactcttgagttatttttcctgatcatataagtgcgatggtcaaaaa 583
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1254 tgcttttgaatataactcttgagttatttttcctgatcatataagtgcgagggtcaaaaa 1195
Query: 584 cggaccggttgatgtgaacagataacaatggtggaggtctagaaatcaaaatttgttttg 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 cggaccggttgatgtgaacagataacaatggtggaggtctagaaatcaaaatttgttttg 1135
Query: 644 actttgangatntgcgaaccatgttctcagtatgcatcctcttatagtcatcatcatcga 703
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 actttgaggatttgcgaaccatgttctcagtatgcatcctcttatagtcatcatcatcga 1075
Query: 704 tggcaagctttgac-acactgattt-acttcattgatcctatcctncatcaaagttacta 761
|||||||||||||| |||||||||| ||||||||||||||||||| |||||| |||||||
Sbjct: 1074 tggcaagctttgacaacactgatttaacttcattgatcctatcctccatcaaggttacta 1015
Query: 762 gtttttgattgacatcttgctgtgattgaatggtgtt-aantgttctactaaatgttcc- 819
||||||||||||||||| |||||||||| |||||||| | ||||||||||||||||||
Sbjct: 1014 gtttttgattgacatctggctgtgattggatggtgttcagttgttctactaaatgttcca 955
Query: 820 aaacagcgttc-atgcac-acgattacagtc-actccttcga-gatctcagg 867
||||||||||| |||||| |||||||||||| |||||||||| |||||||||
Sbjct: 954 aaacagcgttcaatgcacaacgattacagtcaactccttcgatgatctcagg 903
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8096
Number of Sequences: 1807
Number of extensions: 8096
Number of successful extensions: 122
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)