BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD07FM1.SCF screened BAC_end
(864 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig846 1491 0.0
>3x_Contig846
Length = 2695
Score = 1491 bits (752), Expect = 0.0
Identities = 773/779 (99%), Gaps = 1/779 (0%)
Strand = Plus / Plus
Query: 86 ctgcgatggaaacacgcttacgttcaccaccagagacacctctcacgaaatcatcaccaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 ctgcgatggaaacacgcttacgttcaccaccagagacacctctcacgaaatcatcaccaa 707
Query: 146 ctttagtgttataagtgtgcttcaaaccgaaaattgttgcatataagtctctgatgaatt 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 ctttagtgttataagtgtgcttcaaaccgaaaattgttgcatataagtctctgatgaatt 767
Query: 206 cgatatactgttgtctggtaaaatcgttaattcttttgcttggagtcttacaagcgacag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 cgatatactgttgtctggtaaaatcgttaattcttttgcttggagtcttacaagcgacag 827
Query: 266 caaaatctaaagtctgttgcacagtcaaatgcgggaaatggacatccatttcaccgttgt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 caaaatctaaagtctgttgcacagtcaaatgcgggaaatggacatccatttcaccgttgt 887
Query: 326 atataacatccgacttgaaatacttcaacatatccttttgtgagacaccgtcgtacgaga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 atataacatccgacttgaaatacttcaacatatccttttgtgagacaccgtcgtacgaga 947
Query: 386 tgtcacctgagacacccttgaaatgagatagctcaccagccattgtttttaagaaagtgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 tgtcacctgagacacccttgaaatgagatagctcaccagccattgtttttaagaaagtgg 1007
Query: 446 aacaaccagaacctggtctacccaatacaagcaacatctcaccaggcctaacaagtagat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 aacaaccagaacctggtctacccaatacaagcaacatctcaccaggcctaacaagtagat 1067
Query: 506 ttacattgctaatgatatctctcaatgttgtttgtctggccttcttaattcccttgaata 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 ttacattgctaatgatatctctcaatgttgtttgtctggccttcttaattcccttgaata 1127
Query: 566 tagttgcaggtaacattagcatatcaccgtaagtggcaccttcaagaaactgagcgtcaa 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 tagttgcaggtaacattagcatatcaccgtaagtggcaccttcaagaaactgagcgtcaa 1187
Query: 626 caccctttacagcaacgtttctggcggtgataccggccttcctcaaatggataccaccat 685
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 caccctttacagcaacgtgtctggcggtgataccggccttcctcaaatggataccaccat 1247
Query: 686 cgttggacgccttaaagatcccctggatctctctgtacatatcgaagttctcatcgacct 745
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 cgttggacgccttaaggatcccctggatctctctgtacatatcgaagttctcatcgacct 1307
Query: 746 catcccactcagaaagagtcgtagtacgacgggacaatgaccctagaaagagtctctact 805
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1308 catcccactcagaaagagtcgtagtacgacgggacaatga-cctagaaagagtctctact 1366
Query: 806 tttttcagaaacgctggatcctcagcagcatcccttactacctgttgntcagtatcctg 864
||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||
Sbjct: 1367 tttttcagaaacgctggatcctcagcagcatccttaactacctgttggtcagtatcctg 1425
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4608
Number of Sequences: 1807
Number of extensions: 4608
Number of successful extensions: 30
Number of sequences better than 1.0e-20: 1
length of query: 864
length of database: 10,358,551
effective HSP length: 16
effective length of query: 848
effective length of database: 10,329,639
effective search space: 8759533872
effective search space used: 8759533872
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)