BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD07RM1.SCF screened BAC_end
(871 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1485 561 e-160
3x_Contig214 555 e-158
>3x_Contig1485
Length = 9830
Score = 561 bits (283), Expect = e-160
Identities = 290/291 (99%), Gaps = 1/291 (0%)
Strand = Plus / Plus
Query: 34 agcttttacgcgaa-gtaacgatggatctttgattgtttttcttcctggtgttggagaag 92
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9524 agcttttacgcgaaagtaacgatggatctttgattgtttttcttcctggtgttggagaag 9583
Query: 93 tgaaccgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttac 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9584 tgaaccgctgctgcaaaactttgagcaaagctgattctgactccttgttcgagattttac 9643
Query: 153 cattgcattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatcca 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9644 cattgcattccgctttaactcctgatgatcaaaagagagtcttcaaaaaattcaaatcca 9703
Query: 213 gaagaaagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9704 gaagaaagataataatttcaactaacattgctgaaacttccatcactgttgatgactgtg 9763
Query: 273 ttgctaccattgacaccggtcgtgttaaaacattaaattacgatccttcca 323
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9764 ttgctaccattgacaccggtcgtgttaaaacattaaattacgatccttcca 9814
>3x_Contig214
Length = 1381
Score = 555 bits (280), Expect = e-158
Identities = 340/355 (95%), Gaps = 4/355 (1%)
Strand = Plus / Plus
Query: 423 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 26 tatattcgaagaaggtttatgagtcgatggctgagttacctgtgcctgaaatcaaaaggg 85
Query: 483 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tgactttagaatctttgtatttatcagtaagatccatgggcataaaaaacgttactaagt 145
Query: 543 ttttacagcaaggcctatacccgccgcctttatcctcgttggaaaaagcagagcaaatat 602
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 ttttacagcaaggcctagacccgccgcctttatcctcgttggaaaaagcagagcaaatat 205
Query: 603 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 taactacgacaggactaattgatgaaacagacaacacgttaacacagctaggtaagtttg 265
Query: 663 tgagcttgctacctgtcatggatagcanacatgggtaactattgaatttttccattctgt 722
||||||||||||||| ||||||||||| |||||| ||||||||| |||||| || |||
Sbjct: 266 tgagcttgctacctggcatggatagcaaacatggtaaactattgattttttctatcctg- 324
Query: 723 tttgtttgcaccgacataagtgtggttaatttgccttactatttaagcgttggaa 777
|||| ||||||||||||| |||| ||||| |||||| |||| |||||||||||||
Sbjct: 325 tttggttgcaccgacataggtgt-gttaa-ttgcctcacta-ttaagcgttggaa 376
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7367
Number of Sequences: 1807
Number of extensions: 7367
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 2
length of query: 871
length of database: 10,358,551
effective HSP length: 16
effective length of query: 855
effective length of database: 10,329,639
effective search space: 8831841345
effective search space used: 8831841345
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)