BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD08FM1.SCF screened BAC_end
(903 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1304 0.0
>3x_Contig1798
Length = 38968
Score = 1304 bits (658), Expect = 0.0
Identities = 734/750 (97%), Gaps = 7/750 (0%)
Strand = Plus / Minus
Query: 85 atagaaactttttctttggtatcctacgttgaaaattggattaatgggacagttttaatg 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29898 atagaaactttttctttggtatcctacgttgaaaattggattaatgggacagttttaatg 29839
Query: 145 ccaatagtatcgtactatcagggatacatgaaaggcacagcaaaacatacgatgctggta 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29838 ccaatagtatcgtactatcagggatacatgaaaggcacagcaaaacatacgatgctggta 29779
Query: 205 cgaatgttggcgccagccagtacatatgcgactttcatagttctttgttgctgtatacca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29778 cgaatgttggcgccagccagtacatatgcgactttcatagttctttgttgctgtatacca 29719
Query: 265 gaactgttatctagagggcattccaagaagctacctctaaagaattctttgaaaagaacg 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29718 gaactgttatctagagggcattccaagaagctacctctaaagaattctttgaaaagaacg 29659
Query: 325 attttcaagttttcctatatcatcaagtgcacattgaaagtgctagggttgtttacactt 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29658 attttcaagttttcctatatcatcaagtgcacattgaaagtgctagggttgtttacactt 29599
Query: 385 gaacttgccggatttccgattttagcggggtttttgattgatgtgtcactgatctcaccg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29598 gaacttgccggatttccgattttagcggggtttttgattgatgtgtcactgatctcaccg 29539
Query: 445 ctattattaccacagagcagcttgactttcgtaccgagtttttgttccttttggccgcct 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29538 ctattattaccacagagcagcttgactttcgtaccgagtttttgttccttttggccgcct 29479
Query: 505 atgacatttattatttattgggcgattggtactgtttatatgtatcattttgctcaatat 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29478 atgacatttattatttattgggcgattggtactgtttatatgtatcattttgctcaatat 29419
Query: 565 gtcggcatggtaagacaatatattatcagaccgggtgttcttttcttcataagatcacca 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29418 gtcggcatggtaagacaatatattatcagaccgggtgttcttttcttcataagatcacca 29359
Query: 625 gatgatcctaata-taagctattacaggattctttgatatacccaatgaaaacttaactc 683
||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 29358 gatgatcctaatattaagctattacaggattctttgatatacccaatgaaacttcaactc 29299
Query: 684 tccagacttgcattgtcgatggcaatctatacagcattcatttttattaggttcttggat 743
|||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||
Sbjct: 29298 tccagacttgcattgtcgatggcaatctatacagcattca-ttttagtaggtt-ttggat 29241
Query: 744 ttcatacgagacttttgtttcctttacattttacttgtcgg-acttttacctatgaaaca 802
|||||||||||||||||||||| ||||||||||| | |||| ||||||||||||||| ||
Sbjct: 29240 ttcatacgagacttttgtttcc-ttacattttacat-tcggaacttttacctatgaagca 29183
Query: 803 tgggttggtcaacttttataaaaccaaatt 832
||| || ||||||| | |||||||||||||
Sbjct: 29182 tggatt-gtcaactctcataaaaccaaatt 29154
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8608
Number of Sequences: 1807
Number of extensions: 8608
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 903
length of database: 10,358,551
effective HSP length: 16
effective length of query: 887
effective length of database: 10,329,639
effective search space: 9162389793
effective search space used: 9162389793
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)