BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD08RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1217 0.0
>3x_Contig1605
Length = 12373
Score = 1217 bits (614), Expect = 0.0
Identities = 706/733 (96%), Gaps = 3/733 (0%)
Strand = Plus / Minus
Query: 50 ggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttttgt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10442 ggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttttgt 10383
Query: 110 atcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtcttc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10382 atcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtcttc 10323
Query: 170 ctcttctaggattccgtataatagatggtatgttaaaggaactcctctttcaaccatttt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10322 ctcttctaggattccgtataatagatggtatgttaaaggaactcctctttcaaccatttt 10263
Query: 230 ctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttccaagt 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10262 ctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttccaagt 10203
Query: 290 tatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttcgcg 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10202 tatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttcgcg 10143
Query: 350 atatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaaatt 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10142 atatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaaatt 10083
Query: 410 ataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctctgca 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10082 ataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctctgca 10023
Query: 470 ggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagccgt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10022 ggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagccgt 9963
Query: 530 tttcaatggcgcaattcgtaaattagaaagatgtagcanattcttaag-agtttcggtat 588
|||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||
Sbjct: 9962 tttcaatggcgcaattcgtaaattagaaggatgtagcaaattcttaagaagtttcggtat 9903
Query: 589 tatttcgtcttgttaagatgaccctttgtgatggaatttggtgtgcgtcaaaagtcc-at 647
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 9902 tattccgtcttgtaaagatgaccctttgtgatggaatttggtgtgcgtcaaaagtccaat 9843
Query: 648 attatcttccaactcttg-atttcgcttagaactccttctgttattttgggattttcaat 706
|| ||||| |||||||| || |||||||| ||| ||||||||||||||||| ||||| |
Sbjct: 9842 atagtcttcgaactcttgaatatcgcttagtacttcttctgttattttgggaatttcagt 9783
Query: 707 gaaactttcccttttaaaaaaacccttttttccgaccagagaacatttttcctcagagac 766
||||| |||||||| ||| |||| |||||| |||| |||||| || |||||||||||
Sbjct: 9782 gaaacattccctttcaaagaaacgctttttagcgacaagagaaacattatcctcagagac 9723
Query: 767 ttgaaaaaaacta 779
|||||||| ||||
Sbjct: 9722 ttgaaaaagacta 9710
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8570
Number of Sequences: 1807
Number of extensions: 8570
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)