BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD09FM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1798 1229 0.0
>3x_Contig1798
Length = 38968
Score = 1229 bits (620), Expect = 0.0
Identities = 667/683 (97%)
Strand = Plus / Minus
Query: 89 atagaaactttttctttggtatcctacgttgaaaattggattaatgggacagttttaatg 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29898 atagaaactttttctttggtatcctacgttgaaaattggattaatgggacagttttaatg 29839
Query: 149 ccaatagtatcgtactatcagggatacatgaaaggcacagcaaaacatacgatgctggta 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29838 ccaatagtatcgtactatcagggatacatgaaaggcacagcaaaacatacgatgctggta 29779
Query: 209 cgaatgttggcgccagccagtacatatgcgactttcatagttctttgttgctgtatacca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29778 cgaatgttggcgccagccagtacatatgcgactttcatagttctttgttgctgtatacca 29719
Query: 269 gaactgttatctagagggcattccaagaagctacctctaaagaattctttgaaaagaacg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29718 gaactgttatctagagggcattccaagaagctacctctaaagaattctttgaaaagaacg 29659
Query: 329 attttcaagttttcctatatcatcaagtgcacattgaaagtgctagggttgtttacactt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29658 attttcaagttttcctatatcatcaagtgcacattgaaagtgctagggttgtttacactt 29599
Query: 389 gaacttgccggatttccgattttagcggggtttttgattgatgtgtcactgatctcaccg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29598 gaacttgccggatttccgattttagcggggtttttgattgatgtgtcactgatctcaccg 29539
Query: 449 ctattattaccacatagcagcttgactttcgtaccgagtttttgttccttttggccgcct 508
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29538 ctattattaccacagagcagcttgactttcgtaccgagtttttgttccttttggccgcct 29479
Query: 509 atgacatttattatttattgcgcgattggtactgtttatatgtatcattttgctcaatat 568
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 29478 atgacatttattatttattgggcgattggtactgtttatatgtatcattttgctcaatat 29419
Query: 569 gtcggcatggtaagacaatatattatcagaccgggtgttctttttctcatgagatcacca 628
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 29418 gtcggcatggtaagacaatatattatcagaccgggtgttcttttcttcataagatcacca 29359
Query: 629 gatgatcctaatattaagctattacaggattctttgatatacccaatgaaacttcaactc 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 29358 gatgatcctaatattaagctattacaggattctttgatatacccaatgaaacttcaactc 29299
Query: 689 tncagactggcattgtagattgcaatctatacagcattcatttttattagttttggattt 748
| |||||| ||||||| ||| ||||||||||||||||||||||| | |||||||||||
Sbjct: 29298 tccagacttgcattgtcgatggcaatctatacagcattcattttagtaggttttggattt 29239
Query: 749 catacgaaaatttggtttcctta 771
||||||| | ||| |||||||||
Sbjct: 29238 catacgagacttttgtttcctta 29216
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7545
Number of Sequences: 1807
Number of extensions: 7545
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)