BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD09RM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1605 1195 0.0
>3x_Contig1605
Length = 12373
Score = 1195 bits (603), Expect = 0.0
Identities = 678/694 (97%), Gaps = 7/694 (1%)
Strand = Plus / Minus
Query: 47 ggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttttgt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10442 ggaggcctggaacttgtcccttttgattaatgaccggtggcatatcttgatgatttttgt 10383
Query: 107 atcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtcttc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10382 atcaacaggaatatcattctctcgtaaaaagtctattatgacattgaaaggaatgtcttc 10323
Query: 167 ctcttctaggattccgtataatagatggtatgttaaaggaactcctctttcaaccatttt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10322 ctcttctaggattccgtataatagatggtatgttaaaggaactcctctttcaaccatttt 10263
Query: 227 ctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttccaagt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10262 ctctaaaaatatagctcttgatatattatccttcaaaagaaaataacaggtgttccaagt 10203
Query: 287 tatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttcgcg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10202 tatcacatctgcagatatattctcttttttcatcctttccagataaaatattgcttcgcg 10143
Query: 347 atatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaaatt 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10142 atatgggagttgttgtttaattaacctggagttcctgagaaggttccttaacattaaatt 10083
Query: 407 ataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctctgca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10082 ataagtttggacgtttggtgcgataccttcggatttcatttgtgcataaagctctctgca 10023
Query: 467 ggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagccgt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10022 ggtggcaaaattgttcttgtttccgtagtagtatattacatcgttgaacactgaagccgt 9963
Query: 527 tttcaatggcgcaattcgntaattagaaggatgtagcaaattctt-agaaagttcggtat 585
|||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||
Sbjct: 9962 tttcaatggcgcaattcgtaaattagaaggatgtagcaaattcttaagaagtttcggtat 9903
Query: 586 tattccgtcttgt-aagatgaccctttgtgatggaattttgtgtgcgtcaaaagtccaat 644
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9902 tattccgtcttgtaaagatgaccctttgtgatggaatttggtgtgcgtcaaaagtccaat 9843
Query: 645 atagtcttcgaactccttgattatcgcttaatacctccttctgttattttgggaaatttc 704
|||||||||||||| ||||| ||||||||| || || |||||||||||||||| ||||||
Sbjct: 9842 atagtcttcgaact-cttgaatatcgcttagta-cttcttctgttattttggg-aatttc 9786
Query: 705 aatgaaacacttccctttcaaa-aaacgcttttt 737
| ||||||| |||||||||||| |||||||||||
Sbjct: 9785 agtgaaaca-ttccctttcaaagaaacgcttttt 9753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8554
Number of Sequences: 1807
Number of extensions: 8554
Number of successful extensions: 70
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)