BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD10FM1.SCF screened BAC_end
(872 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1485 0.0
>3x_Contig1774
Length = 27771
Score = 1485 bits (749), Expect = 0.0
Identities = 777/784 (99%), Gaps = 2/784 (0%)
Strand = Plus / Plus
Query: 86 aacatggacgtttttgctattgccaacatgaaaagagcaattgatatatatactagctca 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24213 aacatggacgtttttgctattgccaacatgaaaagagcaattgatatatatactagctca 24272
Query: 146 ggtgttcaacttgcccatctaccgacagcaaccgttccagcagttatcagctggcatccg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24273 ggtgttcaacttgcccatctaccgacagcaaccgttccagcagttatcagctggcatccg 24332
Query: 206 acacagaattgggtagttggcggaaattcaagcggtaaagccttcttgttcacttaatga 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24333 acacagaattgggtagttggcggaaattcaagcggtaaagccttcttgttcacttaatga 24392
Query: 266 tcaacggaatcagaagatataaaaggacagtaacgatgaaaagctacttgtacgtttttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24393 tcaacggaatcagaagatataaaaggacagtaacgatgaaaagctacttgtacgtttttg 24452
Query: 326 agtgtatatattttgagtttaattatcattgataataactaatgctaaatatcgttcttt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24453 agtgtatatattttgagtttaattatcattgataataactaatgctaaatatcgttcttt 24512
Query: 386 ctaaagcgaggaaaaacgagttagtgttaggagttattcgtataatttgttctgttttaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24513 ctaaagcgaggaaaaacgagttagtgttaggagttattcgtataatttgttctgttttaa 24572
Query: 446 tcgtagttgaaaagaaataggatatcagctcgttgataagctattacttcaataatatga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24573 tcgtagttgaaaagaaataggatatcagctcgttgataagctattacttcaataatatga 24632
Query: 506 tagtgaaatcaaagatactattgaagtaaatgagtcaacaataacccagttgacaggaaa 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24633 tagtgaaatcaaagatactattgaagtaaatgagtcaacaataacccagttgacaggaaa 24692
Query: 566 aaaacttcgaatcgtaataacatccatatgagagaatgagggggtaatgctatgctaaag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24693 aaaacttcgaatcgtaataacatccatatgagagaatgagggggtaatgctatgctaaag 24752
Query: 626 gggattctatcaaaaaaaagagctctttagttgagactgcacgaatgcatttagaatgta 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24753 gggattctatcaaaaaaaagagctctttagttgagactgcacgaatgcatttagaatgta 24812
Query: 686 aatcatgttatcagaatcaagagtctcattttttgtttgtaaaagagcgatgaaacgcga 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24813 aatcatgttatcagaatcaagagtctcattttttgtttgtaaaagagcgatgaaacgcga 24872
Query: 746 taagagaaagggtaaggcaaagaagtatgtataccctgatcgacaaatatgacggttcat 805
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 24873 taagagaaagggtaaggcaaagaagtaggtata-cctgatcgacaaatatgacggttcat 24931
Query: 806 ggtaaggcaccctggaatctcatccttatnatagatcatcaagtgtcctttggaaccttc 865
|||| |||| ||||| ||||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 24932 ggtagggca-cctgggatctcatccttataatagatcatcaagtgtcctttgaaaccttc 24990
Query: 866 accg 869
||||
Sbjct: 24991 accg 24994
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6578
Number of Sequences: 1807
Number of extensions: 6578
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 872
length of database: 10,358,551
effective HSP length: 16
effective length of query: 856
effective length of database: 10,329,639
effective search space: 8842170984
effective search space used: 8842170984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)