BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD10RM1.SCF screened BAC_end
(881 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1618 1336 0.0
>3x_Contig1618
Length = 12146
Score = 1336 bits (674), Expect = 0.0
Identities = 698/702 (99%), Gaps = 3/702 (0%)
Strand = Plus / Minus
Query: 49 tctatgagcaattagtggtattcagtgtagagttatcctttcgtatgaccaataactata 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9656 tctatgagcaattagtggtattcagtgtagagttatcctttcgtatgaccaataactata 9597
Query: 109 tacgtttagaccaagagggaagtagtgtaattaagggattgatgccagggtctatatctt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9596 tacgtttagaccaagagggaagtagtgtaattaagggattgatgccagggtctatatctt 9537
Query: 169 cgtcatcaaagaaaaaagttcaagagtcagaagagatagtcatatcttctgatgataaca 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9536 cgtcatcaaagaaaaaagttcaagagtcagaagagatagtcatatcttctgatgataaca 9477
Query: 229 gcagttatttcaacaactctacgtcgagaaaacttcagaatcgtcatgtgcaacttatag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9476 gcagttatttcaacaactctacgtcgagaaaacttcagaatcgtcatgtgcaacttatag 9417
Query: 289 gtatatcaggtgtcattgggacagcgttgtttgtcagtatcggtaaggcgttataccgtg 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9416 gtatatcaggtgtcattgggacagcgttgtttgtcagtatcggtaaggcgttataccgtg 9357
Query: 349 gtggaccggtatcgttaattcttggattttcgttatggtgtattccgattctctgtatta 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9356 gtggaccggtatcgttaattcttggattttcgttatggtgtattccgattctctgtatta 9297
Query: 409 cagtcagcacagcagagatggtttgttatttaccaatctcttctccgttcttgaggatgg 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9296 cagtcagcacagcagagatggtttgttatttaccaatctcttctccgttcttgaggatgg 9237
Query: 469 ccaagagatgttgcaatgattcgttagctgttactgcggggtggaatttctggtttcttg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9236 ccaagagatgttgcaatgattcgttagctgttactgcggggtggaatttctggtttcttg 9177
Query: 529 agtgtgttcaaatcccttttgagattgttgcggtcaataccattctgcattattggagag 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9176 agtgtgttcaaatcccttttgagattgttgcggtcaataccattctgcattattggagag 9117
Query: 589 atgatttctctccagctatcccattatgtgtacaagttctgctttatattggaatatcgt 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9116 atgatttctctccagctatcccattatgtgtacaagttctgctttatattggaatatcgt 9057
Query: 649 tattcgcagtaaggtgctacggtgagacagaagcatttttggctagttttaagattttat 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9056 tattcgcagtaaggtgctacggtgagacagaagcatttttggctagttttaagattttat 8997
Query: 709 tagctattgggattggtttctgtttaccgttcattaccatgc 750
|||||||| ||||| ||||||||||| |||||||||| ||||
Sbjct: 8996 tagctatt-ggatt-gtttctgttta-cgttcattacaatgc 8958
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6179
Number of Sequences: 1807
Number of extensions: 6179
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 881
length of database: 10,358,551
effective HSP length: 16
effective length of query: 865
effective length of database: 10,329,639
effective search space: 8935137735
effective search space used: 8935137735
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)