BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD12FM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1622 1318 0.0
3x_Contig1486 182 8e-46
3x_Contig1722 180 3e-45
3x_Contig1727 178 1e-44
3x_Contig1636 178 1e-44
3x_Contig905 101 2e-21
>3x_Contig1622
Length = 13445
Score = 1318 bits (665), Expect = 0.0
Identities = 776/809 (95%), Gaps = 4/809 (0%)
Strand = Plus / Plus
Query: 85 ctagtaaccatgacattttcaataagcttctaagcgtcacggtcatcatgaattgtcgaa 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4064 ctagtaaccatgacattttcaataagcttctaagcgtcacggtcatcatgaattgtcgaa 4123
Query: 145 tgatatattactcttgtgaaactattgaccacaaaacatgaccataactcaatataaata 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4124 tgatatattactcttgtgaaactattgaccacaaaacatgaccataactcaatataaata 4183
Query: 205 tctctccctgccagaaaatttttacagcatggttctttggttgtaaacattccacagaaa 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4184 tctctccctgccagaaaatttttacagcatggttctttggttgtaaacattccacagaaa 4243
Query: 265 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4244 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 4303
Query: 325 gcaggttcgagtcctgctgttgtcgttatttttttataagttagacttcttaacatttct 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4304 gcaggttcgagtcctgctgttgtcgttatttttttataagttagacttcttaacatttct 4363
Query: 385 tttcttgtacaacgtgtgttggcaacaaatcacgctacataatatataccgcgtttgtgg 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4364 tttcttgtacaacgtgtgttggcaacaaatcacgctacataatatataccgcgtttgtgg 4423
Query: 445 ttcctagcagaggttttgttgaaataattcaaactgcttttttaccatctgatttgggag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4424 ttcctagcagaggttttgttgaaataattcaaactgcttttttaccatctgatttgggag 4483
Query: 505 agcattactgtgagtattagctgttaattgtatccgattgcacgtgtttttgacaagcgt 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4484 agcattactgtgagtattagctgttaattgtatccgattgcacgtgtttttgacaagcgt 4543
Query: 565 aacattgataccccggggtagccgattttataaccataccagtatttcattcaataattn 624
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4544 aacattgataccccggggtagccgattttataaccataccagtatttcattcaataattt 4603
Query: 625 tagatatgtctgnntctacgga-gactattgatcccatagcatctctgtgcactcccagc 683
|||||||||||| |||||||| |||||||||||| |||||||||||||||||||| ||
Sbjct: 4604 tagatatgtctg-ttctacggaggactattgatccaatagcatctctgtgcactccaggc 4662
Query: 684 ttagttacgaacaggagtcccttnctgttgaaactgtgtaatgtactggtcgattttttc 743
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||
Sbjct: 4663 ttagtaacgaacaggagtcccttcttgttgaaactgtgtaatgtactggtcgatatattc 4722
Query: 744 tgattaaacatctcttcctacaaanattgggcaacatggcccatccgtttaagcaaaaga 803
|||||||||||||||||||||| | |||||||||||||||| | | ||| | || |||||
Sbjct: 4723 tgattaaacatctcttcctacagaaattgggcaacatggccgagcggttaaggcgaaaga 4782
Query: 804 -taaaaatctttgggcctttgcccgccca-gttcaaatcccggtgttgtcggcatttttt 861
|| |||||||| || || ||||||| || |||| | ||| | |||||||| ||||||||
Sbjct: 4783 ttagaaatcttttgggctctgcccgcgcaggttcgagtcctgctgttgtcgtcatttttt 4842
Query: 862 tgtttatttaaaaactcttttgttttaaa 890
|||||||||||||||| ||||||||||||
Sbjct: 4843 tgtttatttaaaaacttttttgttttaaa 4871
>3x_Contig1486
Length = 12131
Score = 182 bits (92), Expect = 8e-46
Identities = 92/92 (100%)
Strand = Plus / Minus
Query: 267 aggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11494 aggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgc 11435
Query: 327 aggttcgagtcctgctgttgtcgttatttttt 358
||||||||||||||||||||||||||||||||
Sbjct: 11434 aggttcgagtcctgctgttgtcgttatttttt 11403
>3x_Contig1722
Length = 17718
Score = 180 bits (91), Expect = 3e-45
Identities = 91/91 (100%)
Strand = Plus / Minus
Query: 268 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 1662
Query: 328 ggttcgagtcctgctgttgtcgttatttttt 358
|||||||||||||||||||||||||||||||
Sbjct: 1661 ggttcgagtcctgctgttgtcgttatttttt 1631
>3x_Contig1727
Length = 17872
Score = 178 bits (90), Expect = 1e-44
Identities = 93/94 (98%)
Strand = Plus / Plus
Query: 266 taggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13281 taggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcg 13340
Query: 326 caggttcgagtcctgctgttgtcgttattttttt 359
|||||||||||||||||||||||||||| |||||
Sbjct: 13341 caggttcgagtcctgctgttgtcgttatcttttt 13374
>3x_Contig1636
Length = 15667
Score = 178 bits (90), Expect = 1e-44
Identities = 90/90 (100%)
Strand = Plus / Minus
Query: 268 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6398 ggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgcgca 6339
Query: 328 ggttcgagtcctgctgttgtcgttattttt 357
||||||||||||||||||||||||||||||
Sbjct: 6338 ggttcgagtcctgctgttgtcgttattttt 6309
>3x_Contig905
Length = 2723
Score = 101 bits (51), Expect = 2e-21
Identities = 84/95 (88%)
Strand = Plus / Minus
Query: 265 ttaggcaacatggccgagcggttaaggcgaaagattagaaatcttttgggctctgcccgc 324
||||||| ||||||||| ||||||||||| ||| | ||||||| |||||||||||||||
Sbjct: 1800 ttaggcactatggccgagtggttaaggcgacagacttgaaatctgttgggctctgcccgc 1741
Query: 325 gcaggttcgagtcctgctgttgtcgttattttttt 359
|| ||||| | |||||||| |||||||||||||||
Sbjct: 1740 gctggttcaaatcctgctggtgtcgttattttttt 1706
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6608
Number of Sequences: 1807
Number of extensions: 6608
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 6
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)