BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZD12RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig396 771 0.0
3x_Contig169 281 1e-75
>3x_Contig396
Length = 1324
Score = 771 bits (389), Expect = 0.0
Identities = 392/393 (99%)
Strand = Plus / Minus
Query: 47 acaagacggtaaaaaatatatagacatatagctatagtataaatatcgattaaaccccca 106
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 402 acaagacggtaaaaaatatagagacatatagctatagtataaatatcgattaaaccccca 343
Query: 107 acctgaacaatagaacggtatcttccaagagtacacaacccaacggtttttgcttatttt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 acctgaacaatagaacggtatcttccaagagtacacaacccaacggtttttgcttatttt 283
Query: 167 gtcttgggacggtttttcttgacttttcggcattcagcttggttcttttttgtaaaccag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gtcttgggacggtttttcttgacttttcggcattcagcttggttcttttttgtaaaccag 223
Query: 227 tttcagaagaaatttaaaaggtcaaaacacagacaactattaattttaattacaaattat 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tttcagaagaaatttaaaaggtcaaaacacagacaactattaattttaattacaaattat 163
Query: 287 tgtatttgcatttaaatgagagtatcaataaacaggtgataaggagaggttgcatagact 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tgtatttgcatttaaatgagagtatcaataaacaggtgataaggagaggttgcatagact 103
Query: 347 tttgggcgggtatacttgtacaaacgcaaaaactcacactactcagttggtatattgtat 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttgggcgggtatacttgtacaaacgcaaaaactcacactactcagttggtatattgtat 43
Query: 407 tgtcctatcttttgtttggctttacgtttcatt 439
|||||||||||||||||||||||||||||||||
Sbjct: 42 tgtcctatcttttgtttggctttacgtttcatt 10
>3x_Contig169
Length = 1338
Score = 281 bits (142), Expect = 1e-75
Identities = 280/314 (89%), Gaps = 9/314 (2%)
Strand = Plus / Plus
Query: 527 aacaccaagcaacagttacttctaatcgtcagccctaataactgaactttcttggtctgg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacaccaagcaacagttacttctaatcgtcagccctaataactgaactttcttggtctgg 60
Query: 587 atatatcagtttttggataatggggaagtttcattcagcacacagaacatctttttacca 646
||||||||||||| | | || |||||||||||| ||||||||||||||||||||||||||
Sbjct: 61 atatatcagttttggaaaaagggggaagtttcaatcagcacacagaacatctttttacca 120
Query: 647 ttagaatactctttctaaagtatgagccggcagaatactgcagcttcttttgttatt-cg 705
| ||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||
Sbjct: 121 tagaaatactctttctaaagtatgagcggcaagaatactgcagcttc-tttgttattacg 179
Query: 706 acattaca-ggaacttactgatcccaaagaggcttttccta-tttccatattgcttta-a 762
||| |||| |||||| |||||||| || ||||| |||||| |||||||||||| ||| |
Sbjct: 180 acaatacagggaactcactgatccgaagaaggctattcctagtttccatattgcattaga 239
Query: 763 aaatgattc-aacattttcttgtgg-acatc-gtgttatgggcctaaataaggaatcc-t 818
| ||||||| ||||| ||||||||| ||||| |||| |||| | ||||| |||||||| |
Sbjct: 240 agatgattcaaacatattcttgtggaacatcggtgtaatggtcttaaatgaggaatccat 299
Query: 819 ttaccacggaggtt 832
|||||||||||||
Sbjct: 300 ctaccacggaggtt 313
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8052
Number of Sequences: 1807
Number of extensions: 8052
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)