BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZE01FM1.SCF screened BAC_end
         (962 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1002                                                        1298   0.0  

>3x_Contig1002 
          Length = 4066

 Score = 1298 bits (655), Expect = 0.0
 Identities = 697/707 (98%), Gaps = 3/707 (0%)
 Strand = Plus / Minus

                                                                       
Query: 91  cttatgctatgtataatgaccctaccaaagcgctttggaggcattcaaccatggtaacat 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 cttatgctatgtataatgaccctaccaaagcgctttggaggcattcaaccatggtaacat 773

                                                                       
Query: 151 tttggagcgtgattgatatttggcagggacaaagcgtgtgttagcattattttcgttttg 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tttggagcgtgattgatatttggcagggacaaagcgtgtgttagcattattttcgttttg 713

                                                                       
Query: 211 gccaggtcttttgctatcacgtaaaaggacctttcttgttctgtacaaggcagatgtaga 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gccaggtcttttgctatcacgtaaaaggacctttcttgttctgtacaaggcagatgtaga 653

                                                                       
Query: 271 tgccgggataaattctatcatatttttttcaatccagtcattcatctttgggtttaaatc 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 tgccgggataaattctatcatatttttttcaatccagtcattcatctttgggtttaaatc 593

                                                                       
Query: 331 ttgcaggttcaatcgcgatagtttaatccatgttagtgggagttcatagaattttacata 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 ttgcaggttcaatcgcgatagtttaatccatgttagtgggagttcatagaattttacata 533

                                                                       
Query: 391 ctctgtttggtcaatttccgacaattgcctccagggcaaggacttcgagttgtttgcatt 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctctgtttggtcaatttccgacaattgcctccagggcaaggacttcgagttgtttgcatt 473

                                                                       
Query: 451 atcgctgccgccatataagaagatgaatttgaaaagattccatagttgtgggtactgacc 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 atcgctgccgccatataagaagatgaatttgaaaagattccatagttgtgggtactgacc 413

                                                                       
Query: 511 cttttccacttctttaaattctgatgattgtttctttaactcttcggtgctggatttgat 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 cttttccacttctttaaattctgatgattgtttctttaactcttcggtgctggatttgat 353

                                                                       
Query: 571 aatgacacttatttgaagatctagcacccattttgatccatcttcagtgaagtagtacac 630
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 aatgacacttatttgaagatctagcacccattttgatccatcttcagtgaagtagtacac 293

                                                                       
Query: 631 aggcccaaatttatcgtaattctcaagatctttgaaatcaatgactctcaatccaattgg 690
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 aggcccaaatttatcgtaattctcaagatctttgaaatcaatgactctcaatccaattgg 233

                                                                       
Query: 691 ataacgctctctgatctttaatcttttttctacttcgtttctgttttcaaattcttcttt 750
           ||||||||||||||||||||||||||||||||||||||||||||||  || |||||| ||
Sbjct: 232 ataacgctctctgatctttaatcttttttctacttcgtttctgtttcgaagttcttc-tt 174

                                                          
Query: 751 cttttaatagttcccttttttttgccctgttctaagcctttgttcct 797
           |||||||||||| ||| ||| ||| |||||||| ||||| |||||||
Sbjct: 173 cttttaatagtt-cctctttcttggcctgttct-agcctctgttcct 129


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9444
Number of Sequences: 1807
Number of extensions: 9444
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 962
length of database: 10,358,551
effective HSP length: 16
effective length of query: 946
effective length of database: 10,329,639
effective search space: 9771838494
effective search space used: 9771838494
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)