BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE01RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1061 1231 0.0
>3x_Contig1061
Length = 4663
Score = 1231 bits (621), Expect = 0.0
Identities = 750/789 (95%), Gaps = 3/789 (0%)
Strand = Plus / Minus
Query: 40 cttctttca-catgagaattactttttactgcgttcagaacaagaactttgaaaatactc 98
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1094 cttctttcaacatgagaattactttttactgcgttcagaacaagaactttgaaaatactc 1035
Query: 99 gatgagctcatgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtcta 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1034 gatgagctcatgaaaagaggaaaaactcaatcattgtttcagactttgcagcaacgtcta 975
Query: 159 gtgaacttagaacctcttgactgtacagcaatgcccttggttttactaactggtttttcg 218
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 974 gtgaacttagaacctcttgactgtacagcaatgcccttggttttactaactggttttccg 915
Query: 219 agtaacggtaaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgat 278
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 914 agtagcggtaaaacaactgtggccaagaaactcgtcacgttactacaggaaactatcgat 855
Query: 279 tccaacgataaactgacaaactattctgttgtataccattcagatgaaaccttaaacata 338
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 tccaacgataaactgtcaaactattctgttgtataccattcagatgaaaccttaaacata 795
Query: 339 tctcacgatgattatattgggtcaaatgaagaaagaagggcaagatctaacattatgtct 398
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 794 tctcacgatgattatattgggtcaaatgaagaaagaagggcaagatctaagattatgtct 735
Query: 399 gtggtgaagagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacata 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 734 gtggtgaagagagatctttctcgtcagaaagtcgtcattgttgattcgttgaattacata 675
Query: 459 taacgattccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttg 518
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 aaaggattccggtatcaattgcactgtgaagtgaaaaacgtgatgacaacgtattgtttg 615
Query: 519 atccacacggtatgcccaatgagcaacttggttgaatggaatgagaaagatactgatttg 578
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 614 atccacacggtatgcccaatgagcaacttggttgaatggaatgagaaagagactgatttg 555
Query: 579 cataaaccttgagatagcaattctatgaatgctcttatttacaggtatgaaggaccaaac 638
||||||||||| || ||||||| | |||||||||||||| | |||||||||| |||||||
Sbjct: 554 cataaaccttgggaaagcaattttttgaatgctcttattcaaaggtatgaagaaccaaac 495
Query: 639 cctcaaacatcgtgggattcttcattattcactatattgacgtctcaagatgacatcagt 698
||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cctcaaacaaggtgggattctccattattcactatattgacgtctcaagatgacatcagt 435
Query: 699 tccctatacacagatatttagtaggccaatattccaaatctgtttcaaaccggcgacgaa 758
||||||||||||||| |||||| | ||||||||| || | ||||||||||| |||||
Sbjct: 434 accctatacacagata-ttagtaaggcaatattcccaaccgtgttcaaaccggcaacgaa 376
Query: 759 tgattgaaatactgagaagatcctggcaccatttaagcccaacaatggccagaattttga 818
|||| || ||||||||||||||||| || ||| ||||| |||||| |||| || ||||
Sbjct: 375 tgatagagatactgagaagatcctgcaacaattaaagccaaacaat-gccacgatattga 317
Query: 819 aggctgcct 827
|||||||||
Sbjct: 316 aggctgcct 308
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7081
Number of Sequences: 1807
Number of extensions: 7081
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)