BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE02RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1558 1441 0.0
>3x_Contig1558
Length = 12860
Score = 1441 bits (727), Expect = 0.0
Identities = 795/811 (98%), Gaps = 5/811 (0%)
Strand = Plus / Minus
Query: 48 gctactcctgaacaaccaaaagctctcataactgatggaatcacaactgcagtaaattcg 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8308 gctactcctgaacaaccaaaagctctcataactgatggaatcacaactgcagtaaattcg 8249
Query: 108 aattgtcttatatcctcttgatgtttcctggaatatctgaatagtccataaggagtgaaa 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8248 aattgtcttatatcctcttgatgtttcctggaatatctgaatagtccataaggagtgaaa 8189
Query: 168 agttcggacatgaccttaacccagtatttcatatcgtttagcttattgctggatacattg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8188 agttcggacatgaccttaacccagtatttcatatcgtttagcttattgctggatacattg 8129
Query: 228 agcaaatttattatctcatgcgctcgaaggatagccaaattagaaagatattttctaaga 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8128 agcaaatttattatctcatgcgctcgaaggatagccaaattagaaagatattttctaaga 8069
Query: 288 ggatagggataggttgaagaaatctgagaaggtatcgcacgatttataccaagcagcgca 347
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 8068 ggatagggataggttgaagaaatctgagaaggtatcgcacgatttagaccaagcagcgca 8009
Query: 348 ggatttggactggcaccaggattttgtcctattaatggtgcattacctaaatttggagcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8008 ggatttggactggcaccaggattttgtcctattaatggtgcattacctaaatttggagcc 7949
Query: 408 attccatgcattgggtgcggtggtggatgtgtaggatgcacttgctgctgctgctgctgc 467
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 7948 attccatgcattgggtgcggtggtggatgtgtaggaggcacttgctgctgctgctgctgc 7889
Query: 468 tgatgagagttgtgtggatgaggatgagagttatgctgaggttgcgaaagtggatgcgga 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7888 tgatgagagttgtgtggatgaggatgagagttatgctgaggttgcgaaagtggatgcgga 7829
Query: 528 tgtgatgccaaaggttgctgagactgtatctgaacatttgcagttgattgttggccttgc 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7828 tgtgatgccaaaggttgctgagactgtatctgaacatttgcagttgattgttggccttgc 7769
Query: 588 gcttgctgcggtacatggtgttgaagttgttggcgtcgtattccttgctgattttgcagt 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7768 gcttgctgcggtacatggtgttgaagttgttggcgtcgtattccttgctgattttgcagt 7709
Query: 648 gtctgagagctctgtaaatttggctgctgaccagactgttgtggtgtcactggtaaaaga 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 7708 gtctgagagctctgtaaatttggctgctgaccagactgttgtggtgtcactggtaaagga 7649
Query: 708 ccatgattgggagggtctatctgctgcattgcccgtatcttccctgttgttgcggattta 767
|||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| |
Sbjct: 7648 ccatgatt-ggaaggtctatctgctgcattgccggtatc-tccctgttgttgcggattaa 7591
Query: 768 aaataccttgggtgtacggacccggacccggtggcaattgaccctgggaaaaaaggttgc 827
| ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct: 7590 agtaaccttgggtgtacggacccggacccggtggcaattga-cctgggaaagatggttgc 7532
Query: 828 atccccttggttctgaatatttggggccttg 858
|| |||||||||||||||| |||||||||||
Sbjct: 7531 at-cccttggttctgaata-ttggggccttg 7503
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6390
Number of Sequences: 1807
Number of extensions: 6390
Number of successful extensions: 296
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)