BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZE03FM1.SCF screened BAC_end
         (950 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1433                                                        1459   0.0  

>3x_Contig1433 
          Length = 8270

 Score = 1459 bits (736), Expect = 0.0
 Identities = 788/796 (98%), Gaps = 7/796 (0%)
 Strand = Plus / Plus

                                                                       
Query: 86  cttctctgatgattcatgacaaatatattcttaagacatactcccataatcattgaaatt 145
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 58  cttctctgatgattcatgacaaatatattcttaagacatactcccataatcattgaaatt 117

                                                                       
Query: 146 cggcagtaccgatatggaccagttatgaaagagcggtggtcactttttttcaatttcaga 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118 cggcagtaccgatatggaccagttatgaaagagcggtggtcactttttttcaatttcaga 177

                                                                       
Query: 206 gaaaaccattaacgtattattcagcataattaaaaaccatgtgatgcatttttcaaaaaa 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gaaaaccattaacgtattattcagcataattaaaaaccatgtgatgcatttttcaaaaaa 237

                                                                       
Query: 266 tccggcacagctttactaaacaccactttctccaatcaaaattaactcatgcacattgtt 325
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tccggcacagctttactaaacaccactttctccaatcaaaattaactcatgcacattgtt 297

                                                                       
Query: 326 ttacctaaaaccggaggttatatacggtgttgtatcatgctctgttttgcggccttgagt 385
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttacctaaaaccgga-gttatatacggtgttgtatcatgctctgttttgcggccttgagt 356

                                                                       
Query: 386 agttttgaggtatatcatttgatgctggacccttacatcacttttgccaagctttcgttc 445
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 agttttgaggtatatcatttgatgctggacccttacatcacttttgccaagctttcgttc 416

                                                                       
Query: 446 gtgggccccagaattcttcgcatgaaaaagtcaaatctttacgtatatc-aaaaatcacg 504
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 417 gtgggccccagaattcttcgcatgaaaaagtcaaatctttacgtatatcaaaaaatcacg 476

                                                                       
Query: 505 tgagctgttgtgcgcctatatgtgtggagggatccatttcgccacatccgggtaacattc 564
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 tgagctgttgtgcgcctatatgtgtggagggatccatttcgccacatccgggtaacattc 536

                                                                       
Query: 565 tcacgtggccccataatctcgcgttctatgtaccttttcttcccgagtttccatgtttcg 624
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 tcacgtggccccataatctcgcgttctatgtaccttttcttcccgagtttccatgtttcg 596

                                                                       
Query: 625 attatggtaatc-aagtttttccgtgtataaaaggctaaagggttcaagtgcaagtttaa 683
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 attatggtaatcaaagtttttccgtgtataaaaggctaaagggttcaagtgcaagtttaa 656

                                                                       
Query: 684 agcatgccaatcttgcagtagctattaaaaagaaaattattttatc-gtatatagagctt 742
           ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct: 657 agcatgccaatcttgcagtagctattaaaaagaaaatta-tttatcggtatatagagctt 715

                                                                       
Query: 743 acggtgcccgaagacttgggcattattttagctgtttcgttatttggtgatagttgttgg 802
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 acggtg-ccgaagacttgggcattattttagctgtttcgttatttggtgatagttgttgg 774

                                                                       
Query: 803 gttcatcgtatacattcgctataaatc-aagcatcaactgctcaagtcagatcgacactt 861
           ||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct: 775 gttcatcgtatacattcgctataaatcaaagcatcaactgctcaggtcagatcgacactt 834

                           
Query: 862 tttctccaaaaagagt 877
           ||||||||||||||||
Sbjct: 835 tttctccaaaaagagt 850


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7573
Number of Sequences: 1807
Number of extensions: 7573
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)