BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE05FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1001 1643 0.0
>3x_Contig1001
Length = 4198
Score = 1643 bits (829), Expect = 0.0
Identities = 850/856 (99%), Gaps = 1/856 (0%)
Strand = Plus / Minus
Query: 88 caccaccgtgccaaatgcaccttgcccaattcgcttatattcctttacgagcatttctcg 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4135 caccaccgtgccaaatgcaccttgcccaattcgcttatattcctttacgagcatttctcg 4076
Query: 148 cttgacattggatttattactgatgacatcatgagccacgtattcatctaatctttgcat 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4075 cttgacattggatttattactgatgacatcatgagccacgtattcatctaatctttgcat 4016
Query: 208 agacatggcgaatcgcaataaggggaaagaagacagatagtaacagatacaaaagcgatg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4015 agacatggcgaatcgcaataaggggaaagaagacagatagtaacagatacaaaagcgatg 3956
Query: 268 cgatatctatcgaataagaaaaaaattaccactttttgttcgttgtatttcgctcaagtc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3955 cgatatctatcgaataagaaaaaaattaccactttttgttcgttgtatttcgctcaagtc 3896
Query: 328 ttcaaattacaaacttcaaccgttattttgcaagcaaaccttagaatatagatatgttcc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3895 ttcaaattacaaacttcaaccgttattttgcaagcaaaccttagaatatagatatgttcc 3836
Query: 388 taacggatgtaacgtggatggttcaggaaaaaaagggaaatattgaattgtaatgaatca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3835 taacggatgtaacgtggatggttcaggaaaaaaagggaaatattgaattgtaatgaatca 3776
Query: 448 ataaaatctgtattaaatgaattgatgaaatgaaatcgctaatattaataaaagcaacac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 ataaaatctgtattaaatgaattgatgaaatgaaatcgctaatattaataaaagcaacac 3716
Query: 508 aacagggggaaaacactcttactcaagcaagtcaattagtcccttgcaacaagtgatgca 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3715 aacagggggaaaacactcttactcaagcaagtcaattagtcccttgcaacaagtgatgca 3656
Query: 568 gcagtgtctataatgtttcttcgcagtaaattcttcgcgctgcaatcgctcggcaaattc 627
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3655 gcagtgtctataatgtttcttcgcagtaaattcttcgcgctgcaatcgctcggcaaattc 3596
Query: 628 aacaactagaagttcccagaacttaaacgtttgagcacccttagcagtgttgtgtccgtt 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 aacaactagaagttcccagaacttaaacgtttgagcacccttagcagtgttgtgtccgtt 3536
Query: 688 atcagagaccctatttgttactttgaaacaaggttctggtttattttttgtttgtttttt 747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3535 atcagagaccctatttgttactttgaaacaaggttctggtttattttttgtttgtttttt 3476
Query: 748 cctaatttcctaaaactaaaattgattttcatattcggttttccaagaatctgatatcaa 807
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3475 cctaatttcctaaaactaaaattgattttcatattcggttttccaagaatctgatatcaa 3416
Query: 808 tatgactgactgactactgactgagttacacaattattgataaaagcgatataaaagacg 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3415 tatgactgactgactactgactgagttacacaattattgataaaagcgatataaaagacg 3356
Query: 868 ttctaattgaggggacgttccaaac-aaatttaattctaagatctcccanagccgccttt 926
||||||||||||| ||||||||||| ||||||||||||||||||||||| |||| ||||
Sbjct: 3355 ttctaattgagggaacgttccaaacaaaatttaattctaagatctcccagagccagcttt 3296
Query: 927 tatgaaattcgactct 942
|||||| |||||||||
Sbjct: 3295 tatgaagttcgactct 3280
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7578
Number of Sequences: 1807
Number of extensions: 7578
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)