BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE05RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1516 1465 0.0
>3x_Contig1516
Length = 8750
Score = 1465 bits (739), Expect = 0.0
Identities = 851/883 (96%), Gaps = 4/883 (0%)
Strand = Plus / Minus
Query: 45 cttgagtgattctcttgct-atggtcttttcaccttctctaacccagactcttgggtcgt 103
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 5500 cttgagtgattctcttgctcatggtcttttcaccttctctaacccagactcttgggtcgt 5441
Query: 104 agtacttcttgtttggagagtcttcaccggttgggttaccgactggggtcatcaagtagt 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5440 agtacttcttgtttggagagtcttcaccggttgggttaccgactggggtcatcaagtagt 5381
Query: 164 ccttcttgttcaagacgtagtctctgataccggacaagtaagcgaattgacagtcagtat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5380 ccttcttgttcaagacgtagtctctgataccggacaagtaagcgaattgacagtcagtat 5321
Query: 224 ccaagttgacctttacgacaccgaaatcgatggcagtatggaagtccttggtggaggaac 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5320 ccaagttgacctttacgacaccgaaatcgatggcagtatggaagtccttggtggaggaac 5261
Query: 284 cggaaccaccgtggaagaccaagtacaatggcttgtcttctgccttcttgtttaattgct 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5260 cggaaccaccgtggaagaccaagtacaatggcttgtcttctgccttcttgtttaattgct 5201
Query: 344 tagcagcgtagtcttggaaagtacccaacaattctggttttagggcagcggcgatcttgt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5200 tagcagcgtagtcttggaaagtacccaacaattctggttttagggcagcggcgatcttgt 5141
Query: 404 aaacaccgtggacgttaccgaaggcactggcaatggagaagtttggagagatcttggaca 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5140 aaacaccgtggacgttaccgaaggcactggcaatggagaagtttggagagatcttggaca 5081
Query: 464 aagcttcgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagtac 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5080 aagcttcgtggacagagaaaacagtttctggagtggtgtaaagtttgtcgttagaagtac 5021
Query: 524 cttcgttgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccatt 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5020 cttcgttgttgacaccatcttcttcaccaccggtgataccgatttccatttccaaccatt 4961
Query: 584 ggtggatcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatcag 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4960 ggtggatcttggccattctggtgaagtatttgacacatagaccaatgttttcctcatcag 4901
Query: 644 tttcttcggacatatccaacatgtgggaggagatcaatggttcaccgtgcttagcgaagt 703
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 4900 tttcttcggacaaatccaacatgtgggaggagaacaatggttcaccgtgcttagcgaagt 4841
Query: 704 attcttcgtcagcctttagcattccatcgaaccatggtagcaactttctagcacaatgat 763
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 4840 attcttcgtcagcctttagcataccatcgaaccatggtagcaacttcttagcacaatgat 4781
Query: 764 cggtgtgttgatcaactgggatacccgtagcttggagcaatggatctgatgttatgagca 823
|||||||| || ||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct: 4780 cggtgtgtagaacaactgggata-ccgtaagctggagcaatggatctgatgtagtgagca 4722
Query: 824 acaccgattggacctttgatgaaagcattttggcctttgtttggaaacccccttaccacg 883
|| |||| | |||| |||| ||||||||||||||| | |||||||| ||||||||| |
Sbjct: 4721 gcagcgatagaacctctgatagaagcattttggccttcg-ttggaaacacccttacca-g 4664
Query: 884 caaattaaccagccccaccttgggaaatttgccaaatgattgg 926
|||| ||| |||| ||||| | |||| ||||| ||||||||||
Sbjct: 4663 caaagtaagcagcaccaccgttggaagtttgcaaaatgattgg 4621
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5911
Number of Sequences: 1807
Number of extensions: 5911
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)