BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE06FM1.SCF screened BAC_end
(969 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1679 1487 0.0
>3x_Contig1679
Length = 11609
Score = 1487 bits (750), Expect = 0.0
Identities = 858/879 (97%), Gaps = 12/879 (1%)
Strand = Plus / Plus
Query: 86 caagggccaaattcatctaagaaaaacgttgacaacactattgttgtatcaacgactcta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8974 caagggccaaattcatctaagaaaaacgttgacaacactattgttgtatcaacgactcta 9033
Query: 146 aaaaacaggtacttcttgcagttctccgacagagaatcattccaaaagtgggtctcagcg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9034 aaaaacaggtacttcttgcagttctccgacagagaatcattccaaaagtgggtctcagcg 9093
Query: 206 ttcaggctttctgcatttgaatttacacttttacaagaggcttatactggtgcattttta 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9094 ttcaggctttctgcatttgaatttacacttttacaagaggcttatactggtgcattttta 9153
Query: 266 tcgactagaggtgccaagttgagtgacattcgtgttattttagctgacactaagttcgat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9154 tcgactagaggtgccaagttgagtgacattcgtgttattttagctgacactaagttcgat 9213
Query: 326 tatgaggactgggtcagcgttagatttggtgcaggtatgccatggaaacgttgttatgca 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9214 tatgaggactgggtcagcgttagatttggtgcaggtatgccatggaaacgttgttatgca 9273
Query: 386 gttatctcacaacctaccaagaagaataaagagggaaagaaaaaatatgttggggaaatt 445
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 9274 gttatctcacaacctaccaagaagaataaagagggaaag-aaaaatatgttggggaaatt 9332
Query: 446 aatttctatgaaaatgagaaaaaaacaaagaaaactaaagccatggctaccgtcaccaac 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9333 aatttctatgaaaatgagaaaaaaacaaagaaaactaaagccatggctaccgtcaccaac 9392
Query: 506 gcatatgcagtttatgccatttatcctcagtctcctgttctaattgatacatcaactatg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9393 gcatatgcagtttatgccatttatcctcagtctcctgttctaattgatacatcaactatg 9452
Query: 566 atcaaattagaaggcctgatctcgtttggtaagaaagatactcccaaagacactgatatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9453 atcaaattagaaggcctgatctcgtttggtaagaaagatactcccaaagacactgatatt 9512
Query: 626 ttcgtcatgcccgataagcattatgctgttccaggttacgatactattattcgtttctta 685
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9513 ttcgtcatgcccgaaaagcattatgctgttccaggttacgatactattattcgtttctta 9572
Query: 686 atcccaacgatgaatgctntcaatttgtacggtagacctaagagactaattgcaaataaa 745
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 9573 atcccaacgatgaatgctttcaatttgtacggtagacctaagagactaattgcaaataaa 9632
Query: 746 gacgatccattcttctttactatttcgcgtttacctacattacccccatattcattattt 805
||||||||| |||||||||||| |||||| |||||||||||| |||||||||||||| ||
Sbjct: 9633 gacgatcca-tcttctttacta-ttcgcg-ttacctacatta-ccccatattcatta-tt 9687
Query: 806 tacaggtttgatgaatgtattatcctttgactaaaccggtcgggcagtagtcaatggaat 865
|||||| |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 9688 tacagg-ttgatg-atgtattat-ctttgactaaa-cggtcgggcagtagtcaatggaat 9743
Query: 866 ttccanngattggcgtgcacagatgaaagagttattatctaanaaacaatctattggtta 925
|||| ||||||||| |||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 9744 atcca-ggattggcgtcaacagatgaaagagttattatctaaaaaacaatctagtggtta 9802
Query: 926 tactggatgccgatcatcaacttggcctaatgggagcct 964
|||||||||| |||||||||| |||||||||||||||||
Sbjct: 9803 tactggatgcggatcatcaac-tggcctaatgggagcct 9840
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6844
Number of Sequences: 1807
Number of extensions: 6844
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 969
length of database: 10,358,551
effective HSP length: 16
effective length of query: 953
effective length of database: 10,329,639
effective search space: 9844145967
effective search space used: 9844145967
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)