BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE06RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1041 1423 0.0
>3x_Contig1041
Length = 5356
Score = 1423 bits (718), Expect = 0.0
Identities = 779/794 (98%), Gaps = 4/794 (0%)
Strand = Plus / Minus
Query: 53 tagctcttttgccttcgtccctgagatttaat-aagggtttcgtgtgttctaatagtcca 111
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3138 tagctcttttgccttcgtccctgagatttaatcaagggtttcgtgtgttctaatagtcca 3079
Query: 112 gggaatgcaaagccggtggtaaccattgagcataagatcaaagccggcgctatgttttca 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3078 gggaatgcaaagccggtggtaaccattgagcataagatcaaagccggcgctatgttttca 3019
Query: 172 ttaatcttttcattatcattttttctggttgtattgaacaaaataaactgtaagtggttc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3018 ttaatcttttcattatcattttttctggttgtattgaacaaaataaactgtaagtggttc 2959
Query: 232 aatacccttcgtgctacttgaaagctataagatgtaggatcatgcgccaaatcccccaat 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2958 aatacccttcgtgctacttgaaagctataagatgtaggatcatgcgccaaatcccccaat 2899
Query: 292 aacgcttgcaactgccagaatgtaattagtgcaaagtgagggttttcagagctcaacctt 351
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2898 aacgcttgcaactgccagaatgtaattagtgcaaagtgagggttttcagagctcaacctt 2839
Query: 352 aaaagaatttcttccaatgctaatgattccgtttccattgtcaaaagaatctgtaccaat 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2838 aaaagaatttcttccaatgctaatgattccgtttccattgtcaaaagaatctgtaccaat 2779
Query: 412 tgcggaatgtaaaattgaagctccttatgggggaaacttaaaagcttctcacaaagatag 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2778 tgcggaatgtaaaattgaagctccttatgggggaaacttaaaagcttctcacaaagatag 2719
Query: 472 aaatgaatgccgatgttatcagcgtaccttgtcaagtattcaatattattgtataatgta 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2718 aaatgaatgccgatgttatcagcgtaccttgtcaagtattcaatattattgtataatgta 2659
Query: 532 aagttagacgagttgatgtatttcaacagaatatcaagattcctgtcgtctgtcgattcc 591
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 2658 aagttagacgagttgatgtatttcaacagaatatcaggattcctgtcgtctgtcgattcc 2599
Query: 592 atggtttggcaattatcttgtctctcctcgagtaataagtatatgccgcaacagatagat 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 2598 atggtttggcaattatcttgtctctcctcgagtaataagtatatgccgcaacagaaagat 2539
Query: 652 aaagcaaaaatgaattaaagtcaatgaccaaaatcaaatgaaatgaatagataaaaatt- 710
|||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct: 2538 aaagcaaaaatgaattaaggtcaatgaccaaaatcaaatgaaatgaaaagaaaaaaatta 2479
Query: 711 aagaggatctgaacgagcaatctgatctccagcaacaaatattgctg-tgtgatgccaat 769
||||| ||||||||||||||||||| ||||||||||||| ||||| ||||||||||||
Sbjct: 2478 aagagaatctgaacgagcaatctgacaaccagcaacaaata-tgctgttgtgatgccaat 2420
Query: 770 aggataccgagttaatccgcaggtgattgagtcctttcgagtgcctatgcgcatctttac 829
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2419 tggataccgagttaatccgcaggtgattgagtcctttcgagtgcctatgcgcatcttaac 2360
Query: 830 catgatcaagtaaa 843
||||||||||||||
Sbjct: 2359 catgatcaagtaaa 2346
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6992
Number of Sequences: 1807
Number of extensions: 6992
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)