BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE07FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1797 1471 0.0
>3x_Contig1797
Length = 34782
Score = 1471 bits (742), Expect = 0.0
Identities = 826/848 (97%), Gaps = 5/848 (0%)
Strand = Plus / Minus
Query: 87 ttaagagaaaattacagctcaatgaattgatactcacctcaaataattactaaagatgat 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10292 ttaagagaaaattacagctcaatgaattgatactcacctcaaataattactaaagatgat 10233
Query: 147 tagcagtttagggtcgccttgatgttcgacagcattagttgaatacagttattggaaccg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10232 tagcagtttagggtcgccttgatgttcgacagcattagttgaatacagttattggaaccg 10173
Query: 207 tggggaacgttcagaatcaactatacagaaaaaataacttctcgttgccagtaagcaggt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10172 tggggaacgttcagaatcaactatacagaaaaaataacttctcgttgccagtaagcaggt 10113
Query: 267 acatctttttcgaaccgggtctctggctagtttgtaactcaaaacttgttaactaccaac 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10112 acatctttttcgaaccgggtctctggctagtttgtaactcaaaacttgttaactaccaac 10053
Query: 327 aataaggtctatcaatttacttgttatatgagaataatactgacatagggaaacggcaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10052 aataaggtctatcaatttacttgttatatgagaataatactgacatagggaaacggcaaa 9993
Query: 387 aatgcatgatactttgtttgaattattaaggttggttaagcatctctttcacatgcatat 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9992 aatgcatgatactttgtttgaattattaaggttggttaagcatctctttcacatgcatat 9933
Query: 447 caacaagatagctaccttttctcatataataactgtttttgtatctggtgagacttctcc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9932 caacaagatagctaccttttctcatataataactgtttttgtatctggtgagacttctcc 9873
Query: 507 tgaagagtgcgatacccttaatataccaaacagttttcacccttctggatctttcaagaa 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9872 tgaagagtgcgatacccttaatataccaaacagttttcacccttctggatctttcaagaa 9813
Query: 567 acaattcgtttagtccaccattctcggcatagtaattctgccctgtcgcagtttttaact 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9812 acaattcgtttagtccaccattctcggcatagtaattctgccctgtcgcagtttttaact 9753
Query: 627 gcaaaactaanaaaaaaaaagtttatcccaaaactgtcaaagttttaaaaatgagaactg 686
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9752 gcaaaactaaaaaaaaaaaagtttatcccaaaactgtcaaagttttaaaaatgagaactg 9693
Query: 687 acgatttttttcttcctttatcnttgaactggtatttcgattaatcccgaagactgggta 746
|||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 9692 acgattttttctttcctttatcttggaactggtatttcgattaatcccgaagactgggta 9633
Query: 747 cgcctgctcgccttcgtattttgctatcgatttcactctagacgtactattttatttatt 806
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 9632 cgcctgctcgccttcgtatttgcctatcgatttcactctagacgtactattttatttatt 9573
Query: 807 atactgatattacatatctgcttcgttagaaaacctaa-cagtcctcaca-gtttaagtc 864
||||||||||||||||||||||||||||||| | |||| ||||||||||| || ||||||
Sbjct: 9572 atactgatattacatatctgcttcgttagaagaactaagcagtcctcacaggtataagtc 9513
Query: 865 ggaagttttttg-cgttacaaaaattgat-tcattatttt-aaaccattttatttaaatt 921
|||||||||||| ||||||| |||| ||| |||| ||||| |||| || | ||||| |||
Sbjct: 9512 ggaagttttttgccgttacagaaatagatctcataattttaaaacaatctcatttagatt 9453
Query: 922 accaagct 929
||||||||
Sbjct: 9452 accaagct 9445
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7151
Number of Sequences: 1807
Number of extensions: 7151
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)