BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE07RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1755 1398 0.0
>3x_Contig1755
Length = 22936
Score = 1398 bits (705), Expect = 0.0
Identities = 788/809 (97%), Gaps = 5/809 (0%)
Strand = Plus / Plus
Query: 49 cttgagaaaaagaaagatcccgggtaacacccttgacttagatgaaagtttaccaggctt 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17373 cttgagaaaaagaaagatcccgggtaacacccttgacttagatgaaagtttaccaggctt 17432
Query: 109 tctgcgaaccgtagcagcaagattagcttctgctggaggtatctggtttagagtgtgaaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17433 tctgcgaaccgtagcagcaagattagcttctgctggaggtatctggtttagagtgtgaaa 17492
Query: 169 aatacacgccatttaccagtacaaaggcaattcactgtctttcagtaatctaatcggtag 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17493 aatacacgccatttaccagtacaaaggcaattcactgtctttcagtaatctaatcggtag 17552
Query: 229 caaatgtttggatgttgttttgttggaactgcaaatccaaaacgccaattgatttacact 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17553 caaatgtttggatgttgttttgttggaactgcaaatccaaaacgccaattgatttacact 17612
Query: 289 tagagttctgatcttaggttttgtactcctcctccgtataattcagtagactttttaacc 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17613 tagagttctgatcttaggttttgtactcctcctccgtataattcagtagactttttaacc 17672
Query: 349 gtgaactggtatcgctatacatcggcacaaatttctacattcgacctgcaggctgtgaaa 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17673 gtgaactggtatcgctatacatcggcacaaatttctacattcgacctgcaggctgtgaaa 17732
Query: 409 tcaggcagaattaacttaacaactccattttttgtttgccccatgaatgatgaaagtttt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17733 tcaggcagaattaacttaacaactccattttttgtttgccccatgaatgatgaaagtttt 17792
Query: 469 ctaaaaaaacctgttatccctagggcgcggtacactaaacattcttaagtgttgttcaat 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17793 ctaaaaaaacctgttatccctagggcgcggtacactaaacattcttaagtgttgttcaat 17852
Query: 529 caaaacaatacatcgatgtacattctgtagtttaccgtaaattctaacttcttgagttgt 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17853 caaaacaatacatcgatgtacattctgtagtttaccgtaaattctaacttcttgagttgt 17912
Query: 589 atttcgggggtttttgagatcgaaattgcttaaccttttctcaattggcataatctttat 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17913 atttcgggggtttttgagatcgaaattgcttaaccttttctcaattggcataatctttat 17972
Query: 649 attgacacctgcttcacttctgagaaa-tcaatcctctgaccttcatgccctatgaagta 707
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct: 17973 attgacacctgcttcacttctgagaaattcaatcctctgaccttcatgccctatgaggta 18032
Query: 708 gcttacttgcaaacgactcaaga-caaactttccttcgttgggagt-acattctcagctt 765
||||||||||||||||||||||| |||||||||| ||| ||||||| |||||||||||||
Sbjct: 18033 gcttacttgcaaacgactcaagaccaaactttcc-tcggtgggagtcacattctcagctt 18091
Query: 766 ctgtttcaat-ttgaaaatatttttagtttttcccagaaagccacttttaaaaccattgg 824
|||||||||| | ||||||||| | |||||| || ||| || ||||| |||| ||||||
Sbjct: 18092 ctgtttcaatctggaaaatattatcagttttaccaggaatgcaactttcaaaaacattgg 18151
Query: 825 atttgttggaatccaagtcctttttcact 853
|||||||||| ||||||||| ||||||
Sbjct: 18152 tattgttggaatacaagtccttgttcact 18180
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9083
Number of Sequences: 1807
Number of extensions: 9083
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)