BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE08FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1766 1568 0.0
>3x_Contig1766
Length = 23951
Score = 1568 bits (791), Expect = 0.0
Identities = 828/835 (99%), Gaps = 4/835 (0%)
Strand = Plus / Minus
Query: 87 cggagtagttagagaactgaaggataatgagaagatacgtgttttagttgaggggggttg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13773 cggagtagttagagaactgaaggataatgagaagatacgtgttttagttgaggggggttg 13714
Query: 147 ctaaattgtctaaacactgctatcgccgaagataccccaatattgctcaacaccttgagc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13713 ctaaattgtctaaacactgctatcgccgaagataccccaatattgctcaacaccttgagc 13654
Query: 207 accggcatccttccagtagtcgttgtatgtggtgaataagatggcttgggaacctagagt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13653 accggcatccttccagtagtcgttgtatgtggtgaataagatggcttgggaacctagagt 13594
Query: 267 gtcgatgatggattggacacaggtttcttggtttgatttggatggaacacaacttccgta 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13593 gtcgatgatggattggacacaggtttcttggtttgatttggatggaacacaacttccgta 13534
Query: 327 agtgtcaccctttgttggccagccagtttcagtgacgatgattttcttgccgttgttaca 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13533 agtgtcaccctttgttggccagccagtttcagtgacgatgattttcttgccgttgttaca 13474
Query: 387 cgtagaagacaagttgtccaattgctgtttcacccatggtccacagttggatggttccac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13473 cgtagaagacaagttgtccaattgctgtttcacccatggtccacagttggatggttccac 13414
Query: 447 attaccatcccagtatggatgacagttaactgcaataaaatctgacatactgcatagacc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13413 attaccatcccagtatggatgacagttaactgcaataaaatctgacatactgcatagacc 13354
Query: 507 agagttgttttcggtggccactatggtatcaacggtgacaacgtcacctgtgtagccaat 566
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 13353 agagttgttttcggtggccactagggtatcaacggtgacaacgtcacctgtgtagccaat 13294
Query: 567 agcactcaatttagatttagctgattcaacagcgctactcagttgagaaacggtactcgt 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13293 agcactcaatttagatttagctgattcaacagcgctactcagttgagaaacggtactcgt 13234
Query: 627 tcctgcattgatcagttcgttaccgacagatatagcgtaaaccttggagaaatcaccgtt 686
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13233 tcctgcattgatcagttcgttaccgacagaaatagcgtaaaccttggagaaatcaccgtt 13174
Query: 687 gaaagcagattcgattgcactgacgctggaggcaatgttatcgatgtcgtagataccaac 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13173 gaaagcagattcgattgcactgacgctggaggcaatgttatcgatgtcgtagataccaac 13114
Query: 747 aaagatcttttgaccgctttgtaattgagatagaattgcttccatcgcgtcacagtcagt 806
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13113 aaagatcttttgaccgctttgtaattgagatagaattgcttccatcgcgtcacagtcagt 13054
Query: 807 gtcgtagattctaatgacactgaattgtgacaaattctgaatgtcggatttgatggtgtc 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13053 gtcgtagattctaatgacactgaattgtgacaaattctgaatgtcggatttgatggtgtc 12994
Query: 867 tgaagacttacaa-aaccactgctgttgt-tggaggagt-agtgatacccaaagc 918
||||||||||||| ||||||||||| ||| |||| |||| |||||||||||||||
Sbjct: 12993 tgaagacttacaagaaccactgctggtgtatgga-gagtaagtgatacccaaagc 12940
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5268
Number of Sequences: 1807
Number of extensions: 5268
Number of successful extensions: 31
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)