BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE08RM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1412 1427 0.0
>3x_Contig1412
Length = 7639
Score = 1427 bits (720), Expect = 0.0
Identities = 863/898 (96%), Gaps = 10/898 (1%)
Strand = Plus / Plus
Query: 45 ctttgagctttaacgtctacaatctatggatgaagaagctacgtaaaaaccttgaaaaaa 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4523 ctttgagctttaacgtctacaatctatggatgaagaagctacgtaaaaaccttgaaaaaa 4582
Query: 105 ttgccgttccagcagttgttgtttcacagtcactaccagggtttgttgttcctgaaccat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4583 ttgccgttccagcagttgttgtttcacagtcactaccagggtttgttgttcctgaaccat 4642
Query: 165 ctcagttcctccagaaattcttacagaacagctcaacctataaaatggatgatgttttaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4643 ctcagttcctccagaaattcttacagaacagctcaacctataaaatggatgatgttttaa 4702
Query: 225 catttttcaacaatatttattgggcaatgaagtcgtacgatattgaaatggaagtctttg 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4703 catttttcaacaatatttattgggcaatgaagtcgtacgatattgaaatggaagtctttg 4762
Query: 285 aagacgttatcacgaacctattaaaattactggatgctttatgctttaatgatttgattc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4763 aagacgttatcacgaacctattaaaattactggatgctttatgctttaatgatttgattc 4822
Query: 345 taagaaagaatttcttatcgtggaaacgtggtttgcaattaaattataatgtcacaagaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4823 taagaaagaatttcttatcgtggaaacgtggtttgcaattaaattataatgtcacaagaa 4882
Query: 405 tcgaagaatggtgtaaaagccaccacatttctgaagtaagtgtatgtcttcaacatattc 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4883 tcgaagaatggtgtaaaagccaccacatttctgaagtaagtgtatgtcttcaacatattc 4942
Query: 465 tccaagcggcaaagttactacagctaaaaaagcgtattgttgccgatattgatatcatct 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4943 tccaagcggcaaagttactacagctaaaaaagcgtattgttgccgatattgatatcatct 5002
Query: 525 gggacatctgtaactgcctaaaacctatccaattgaagcagcttattactcaatattctg 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5003 gggacatctgtaactgcctaaaacctatccaattgaagcagcttattactcaatattctg 5062
Query: 585 tcgcagactatgaggagccaattgctccggaaatcttngcatatgtggctgagaaagtga 644
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 5063 tcgcagactatgaggagccaattgctccggaaatcttgcaatatgtggctgagaaagtga 5122
Query: 645 agaatgatacatctaaagctgaagttgggaacaatgatgttttcctaccagttgantatg 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5123 agaatgatacatctaaagctgaagttgggaacaatgatgttttcctaccagttgataatg 5182
Query: 705 gcccattcgatgacccatatc-aaaggtttgagtaagagcttttcggtagaatcg-agca 762
|||||||||| |||||||||| ||||||| ||||||||| |||||||| |||| ||||
Sbjct: 5183 gcccattcgaggacccatatcaaaaggttgaagtaagagc-tttcggtaagatcgaagca 5241
Query: 763 tacattcctgcatggttgaacccttccaaatac-agaaagatcgtcgagttgggtactca 821
|||||||||||||||||||| ||| |||| || |||| ||||||||||||| ||||||
Sbjct: 5242 tacattcctgcatggttgaa-cctcccaataacaagaagaatcgtcgagttggttactca 5300
Query: 822 atttgttgctgtcccagaaccaggcaga-ttaagtcagctacccttttcattttc-atga 879
|||||||||||||| |||| || ||||| | |||||||||| |||||||| |||| ||||
Sbjct: 5301 atttgttgctgtccaagaa-caagcagagtaaagtcagcta-ccttttcaatttcaatga 5358
Query: 880 ttcacctattatattccccgaat-tattatacccttgtaatttttatggatccaaata 936
||||| ||| |||| |||||| | ||| ||||||||||||||||||||||||||||||
Sbjct: 5359 ttcacatataatatcccccgagtatataatacccttgtaatttttatggatccaaata 5416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7320
Number of Sequences: 1807
Number of extensions: 7320
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)