BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE09FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1193 0.0
>3x_Contig1780
Length = 27883
Score = 1193 bits (602), Expect = 0.0
Identities = 646/658 (98%), Gaps = 3/658 (0%)
Strand = Plus / Minus
Query: 86 aagaaagccagattaatttttaggttgaacagaaggttcttgctgattttgattctgagg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 939 aagaaagccagattaatttttaggttgaacagaaggttcttgctgattttgattctgagg 880
Query: 146 ttgaacctgctgagtcgaagaaggcacaccgaaaaacggtgccataggaaacatgaatgg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 ttgaacctgctgagtcgaagaaggcacaccgaaaaacggtgccataggaaacatgaatgg 820
Query: 206 catgaaaggaactggaggaggaggcatgacttttggctttttgacacctgtttcagcaac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 catgaaaggaactggaggaggaggcatgacttttggctttttgacacctgtttcagcaac 760
Query: 266 aggtgcagcaccagcgacaggttcttcttctaacaatcttttcttattttgctttatgaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aggtgcagcaccagcgacaggttcttcttctaacaatcttttcttattttgctttatgaa 700
Query: 326 ttcctgaacttttctttgtatctcctgtactggttccaatgaatctaataagatatccga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttcctgaacttttctttgtatctcctgtactggttccaatgaatctaataagatatccga 640
Query: 386 tgtttgacaaagaggacaaacgaaatctgattctagtagtgcatcctccatagctagtcg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgtttgacaaagaggacaaacgaaatctgattctagtagtgcatcctccatagctagtcg 580
Query: 446 tgaaacgacttttccacaacatttagtacattttacaggatctcgtagcaatccaccagt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 tgaaacgacttttccacaacatttagtacattttacaggatctcgtagcaatccaccagt 520
Query: 506 taaacaacatttcaactcatccggcaagtctggaaactgtcccttcatatacaatttatc 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 taaacaacatttcaactcatccggcaagtctggaaactgtcccttcatatacaatttatc 460
Query: 566 ctcttgagacatcatataactctgctgntgntgncttctttgataatctt-ccacgaagt 624
||||||||||||||||||||||||||| || || |||||||||||||||| |||||||||
Sbjct: 459 ctcttgagacatcatataactctgctgttgttgtcttctttgataatcttcccacgaagt 400
Query: 625 ttgatctgccatatggactacgaatttccctt-atcagtgaccataatcttcttcttagc 683
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 399 ttgatctgccatatggactacgaatttcccttcatcagtgaccataatcttcttctcagc 340
Query: 684 catctcctncggagtcatcgaagaatgatctatcttttatgctttccaaaaacttctt 741
|||||||| ||||||||||||||| |||||||| | |||||||| ||||||||||||
Sbjct: 339 catctcctccggagtcatcgaagatggatctatc-tctatgcttttcaaaaacttctt 283
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7444
Number of Sequences: 1807
Number of extensions: 7444
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)