BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE10FM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1497 0.0
>3x_Contig1730
Length = 17223
Score = 1497 bits (755), Expect = 0.0
Identities = 834/853 (97%), Gaps = 6/853 (0%)
Strand = Plus / Minus
Query: 87 cttaagatggctgatacaactactagattctgcatctacggtaatgtgtgacccgtcagt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13907 cttaagatggctgatacaactactagattctgcatctacggtaatgtgtgacccgtcagt 13848
Query: 147 atgaatagtgacagacccatcttcaatcgtgatcagggccaatgactggacagaaccaaa 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13847 atgaatagtgacagacccatcttcaatcgtgatcagggccaatgactggacagaaccaaa 13788
Query: 207 ttgtaacatcttcaacgcgtctagattttcctcaaattcacaattaagatcgatgattat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13787 ttgtaacatcttcaacgcgtctagattttcctcaaattcacaattaagatcgatgattat 13728
Query: 267 ggcgaacttggaatgcgtaggcacagcagcagttcctaaatgttttaggtatgacgatga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13727 ggcgaacttggaatgcgtaggcacagcagcagttcctaaatgttttaggtatgacgatga 13668
Query: 327 taatggaatattccctagttcattataagcattacaaaaagaacaaaaccacccagctcg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13667 taatggaatattccctagttcattataagcattacaaaaagaacaaaaccacccagctcg 13608
Query: 387 tgaatctcttgaacataaaaaattcgcaaaccctccacagattttacaattggtataatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13607 tgaatctcttgaacataaaaaattcgcaaaccctccacagattttacaattggtataatt 13548
Query: 447 ctcactgcttgctaggcttgaattcccgtcaattgtcaagtccggctcacaaatggcact 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13547 ctcactgcttgctaggcttgaattcccgtcaattgtcaagtccggctcacaaatggcact 13488
Query: 507 tatcgatccacggttatcatctccacaatcgagaactctagctaagcaatctgtccggga 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13487 tatcgatccacggttatcatctccacaatcgagaactctagctaagcaatctgtccggga 13428
Query: 567 cgtaggaacggctccataattcaattcaaacatcaagttctagatggtggaatatgcgga 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13427 cgtaggaacggctccataattcaattcaaacatcaagttctagatggtggaatatgcgga 13368
Query: 627 cacttgacggatgaaggtgataactctactgtgcgtgtctgctgataggaaaacctttct 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13367 cacttgacggatgaaggtgataactctactgtgcgtgtctgctgataggaaaacctttct 13308
Query: 687 ctggagatgagatccnnagat-agatagagcaggtagcgggagattcaatatcatcacaa 745
||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct: 13307 ctggagatgagatcc-aagataagatagagcaggtagcggagaattcaatatcatcacaa 13249
Query: 746 gatccccggtatgtatatattangttcattctctttaattttcagtgtttctacgaagtt 805
||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 13248 gatccgggtaatgtatatattaggttcattctctttaattttcagtgtttctacgaagtt 13189
Query: 806 gtttatggcatctgaaaaagctgaaaaattttgaaaaagagaaagctgaatag-taggtt 864
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct: 13188 gtttatggcatctgaaaaagctgaaaaattttgaaaaagagaaagctg-atagttagttt 13130
Query: 865 agcttggttaccgaagagatcaccacatttgtgcacaccattgtatttaaattaactctt 924
|||||| |||| ||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 13129 agcttgattacagaagagatcaccacatttgtgcaca-cattgtatttaaa-taactctt 13072
Query: 925 caaaagtccatca 937
|| ||||||||||
Sbjct: 13071 cagaagtccatca 13059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6407
Number of Sequences: 1807
Number of extensions: 6407
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)