BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE11FM1.SCF screened BAC_end
(938 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1115 1467 0.0
>3x_Contig1115
Length = 4702
Score = 1467 bits (740), Expect = 0.0
Identities = 834/859 (97%), Gaps = 5/859 (0%)
Strand = Plus / Minus
Query: 85 ttaactgcattcttggcctcttctactaaatttgcattagctatcaaaatgtttcctttt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2903 ttaactgcattcttggcctcttctactaaatttgcattagctatcaaaatgtttcctttt 2844
Query: 145 tcttcgttagtttgttgtgcatgtaataacgattttataatagtttcattgttattcttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2843 tcttcgttagtttgttgtgcatgtaataacgattttataatagtttcattgttattcttt 2784
Query: 205 gcctcatccaattttttttgagcctggaaatcctgattttggatacggctagcatatttg 264
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2783 gcctcatccaattttttttgagcctggaaatcctgattttggatacagctagcatatttg 2724
Query: 265 tttgattctattgtagaaaagaatgtgtctacggtattattgcacattccgccgatttcg 324
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2723 tttgattctattgtagaaaagaatgtgtctacggtattattgtacattccgccgatttcg 2664
Query: 325 ataattttgacgtcagtggaatctcctacaaagggtttgaagggatggaaatttgaaaaa 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2663 ataattttgacgtcagtggaatctcctacaaagggtttgaagggatggaaatttgaaaaa 2604
Query: 385 gtgtattcaagttccggcttgtctcttaaaggatcgtacagtttgttcttatgacccact 444
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 2603 gtgtattcaagttccggcttgtctcttaaaggatcgtacagtttgttcttatgagccact 2544
Query: 445 atataacctattcttgttgacgtagtcgagatcaatttatttgcttgaacttctaatgag 504
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2543 atataacctattcttgttgacgtagtcgagatcaatttatttgcttgaacttctaatgaa 2484
Query: 505 gacattaagtcaacaagcacagagacattgtgtttaaactcaagacacgaagaagatgga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2483 gacattaagtcaacaagcacagagacattgtgtttaaactcaagacacgaagaagatgga 2424
Query: 565 tcaataccaatagctttcaacgagttttgaatcaaatcacttgataaatgtggagcatga 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2423 tcaataccaatagctttcaacgagttttgaatcaaatcacttgataaatgtggagcatga 2364
Query: 625 acaaataaaagtttttgaatagacggaacagatgcttttcccttgagtttacctttttta 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2363 acaaataaaagtttttgaatagacggaacagatgcttttcccttgagtttacctttttta 2304
Query: 685 gcctctccgggcacaatagtgctttaggctttaacgtcggcttctttc-accaatctgct 743
|||||||| |||||||| ||||||| |||||||||||| ||||||||| |||||||||||
Sbjct: 2303 gcctctccaggcacaattgtgcttttggctttaacgtcagcttctttcaaccaatctgct 2244
Query: 744 atttcattttcgaaatattccttaggatcatgaaccgtagttgaagtttggtt-atttct 802
|||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 2243 attttattttcgaaatattccttaggatcaagaaccgtagttgaagtttggttaatttct 2184
Query: 803 gcaaagttggccatgtcatacaattcacc-actttcatcgaataatcatcgacaactctg 861
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct: 2183 gcaaagttggccatgtcataaaattcaccaactttcatcgaataatcatcgacaactctc 2124
Query: 862 tgtagtaaaagattttnttggtcagcatcc-attaaagcacattttccgcactg-aaaat 919
|||||||||||| ||| ||||||||||||| || ||||||||||| | |||||| |||||
Sbjct: 2123 tgtagtaaaagaattttttggtcagcatccaataaaagcacatttccggcactgaaaaat 2064
Query: 920 gctaaaacagggtcgtact 938
|||||||| ||| |||||
Sbjct: 2063 tctaaaacaaggtagtact 2045
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7683
Number of Sequences: 1807
Number of extensions: 7683
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 938
length of database: 10,358,551
effective HSP length: 16
effective length of query: 922
effective length of database: 10,329,639
effective search space: 9523927158
effective search space used: 9523927158
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)