BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE11RM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1796 1624 0.0
>3x_Contig1796
Length = 24558
Score = 1624 bits (819), Expect = 0.0
Identities = 881/895 (98%), Gaps = 6/895 (0%)
Strand = Plus / Plus
Query: 49 agttgtattggtggatcctaaaatcgattggaaatct-agggtgtgtggacactttagaa 107
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 21636 agttgtattggtggatcctaaaatcgattggaaatctcagggtgtgtggacactttagaa 21695
Query: 108 taaattagaaaggaatgtggtttgtacgatatgtatttttaaaaaatttagttgaaatag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21696 taaattagaaaggaatgtggtttgtacgatatgtatttttaaaaaatttagttgaaatag 21755
Query: 168 tggactatcgatttttgttttaagaatcgtatttaaacatttcaaaagaacctccatttg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21756 tggactatcgatttttgttttaagaatcgtatttaaacatttcaaaagaacctccatttg 21815
Query: 228 gagacacatcaaacgaagagaccaaaggaaaaattggattttagtattggatactactgc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21816 gagacacatcaaacgaagagaccaaaggaaaaattggattttagtattggatactactgc 21875
Query: 288 ggatgataacagtagaatatcctatggatatgaactaactaaaaaagttgcgctattgaa 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21876 ggatgataacagtagaatatcctatggatatgaactaactaaaaaagttgcgctattgaa 21935
Query: 348 aattaatgacagcctatatacggacaacgcacagatggttcctccgatacaaaagaatcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21936 aattaatgacagcctatatacggacaacgcacagatggttcctccgatacaaaagaatcc 21995
Query: 408 gcatgtaggaagcattgcagtattgcaaacaaaaccaggaaaaaacgatgcattaaacat 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21996 gcatgtaggaagcattgcagtattgcaaacaaaaccaggaaaaaacgatgcattaaacat 22055
Query: 468 attgaaaagggtcgctcataacgtatcgtatctgatgaaagaggaaaggttcaaagtaag 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22056 attgaaaagggtcgctcataacgtatcgtatctgatgaaagaggaaaggttcaaagtaag 22115
Query: 528 acaattagttgagttttatccacggaatcgatcacttttaggtatgaacgtgaacaaagg 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22116 acaattagttgagttttatccacggaatcgatcacttttaggtatgaacgtgaacaaagg 22175
Query: 588 catgaagatcatgttgcggcttagagacccattagacgaatataaatttctaccgataga 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22176 catgaagatcatgttgcggcttagagacccattagacgaatataaatttctaccgataga 22235
Query: 648 atctattatgggtaccatgcttcatgagcttacccataatttacatggtcctcatgaccg 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22236 atctattatgggtaccatgcttcatgagcttacccataatttacatggtcctcatgaccg 22295
Query: 708 aaag-tttacgaaaagctggatcaattatcgggaagacaatggaccattgaacatatggg 766
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 22296 aaagttttacgaaaagctggatcaattatcgggaagacaatggaccattgaacaaatggg 22355
Query: 767 actntacgacagctttctcggcaccgggaaaagattgngtagcaaaccgatggggtcgat 826
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 22356 actttacgacagctttctcggcaccgggaaaagattgggtagcaaaccgatggggtcgat 22415
Query: 827 tattattggaaagacatttagaaagaggt-aagggagaagactaggtggtacgacacctg 885
|||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 22416 tattattggaaagaca-ttagaaagaggtaaaggaagaagactaggtggtacgacacctg 22474
Query: 886 naacagaccaagnatggatgctatgag-aatggcagcaatcgcggcagataaaag 939
||||||||||| | | |||||| ||| |||||||||||||||||||||||||||
Sbjct: 22475 gaacagaccaagaaggaatgcta-gagaaatggcagcaatcgcggcagataaaag 22528
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6228
Number of Sequences: 1807
Number of extensions: 6228
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)