BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE12FM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 1441 0.0
>3x_Contig1330
Length = 7703
Score = 1441 bits (727), Expect = 0.0
Identities = 791/806 (98%), Gaps = 5/806 (0%)
Strand = Plus / Minus
Query: 89 gatagatttcgtagtgcaatcttattatgacttggatcatttttatacagcgggatctta 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4524 gatagatttcgtagtgcaatcttattatgacttggatcatttttatacagcgggatctta 4465
Query: 149 caaagaagaacgtaatccacatacatcttctcattgacccatgttgtactttgcaacctc 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4464 caaagaagaacgtaatccacatacatcttctcattgacccatgttgtactttgcaacctc 4405
Query: 209 tctctgagtgctgaaaaatattgctctgcgagatcaatgcgatgagtctcttcaatcaat 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4404 tctctgagtgctgaaaaatattgctctgcgagatcaatgcgatgagtctcttcaatcaat 4345
Query: 269 aacgtaacaagatcgttagtgatctgaaaatcttgctctaatgaaagctggaaaccgcca 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4344 aacgtaacaagatcgttagtgatctgaaaatcttgctctaatgaaagctggaaaccgcca 4285
Query: 329 tccttcaaatatcgcagacatcgtatagcctgatttatcaatgtataatactgacgaagt 388
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4284 tccttcaaatatcgcagacatcgtatagcttgatttatcaatgtataatactgacgaag- 4226
Query: 389 tccaattcagtttcaatttccgtaacaacatcatgtgcagtcaaagtgtactgtttcgag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 tccaattcagtttcaatttccgtaacaacatcatgtgcagtcaaagtgtactgtttcgag 4166
Query: 449 agatgatatatcaaatctaactgctgtgcttttctgctcaaggacttttgatcaaaagag 508
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4165 agatgatatatcaaatctaactgctgtgcttttctgttcaaggacttttgatcaaaagag 4106
Query: 509 atcggaacgtttagcagctcatctttgaaggtgtccatagctagtattgtgtatcataca 568
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4105 atcggaacgtttagcagctcatctttgaaggtgtccatagctattattgtgtatcataca 4046
Query: 569 tcaatcggaagctattttcagcatgggcatatgctgtt-cttgagacacgttaattgacg 627
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4045 tcaatcggaagctattttcagcatgggcatatgctgttccttgagacacgttaattgacg 3986
Query: 628 tgtattattctagggcaaaatggttatatgaaactttgaaatatataagggaaccaggat 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3985 tgtattattctagggcaaaatggttatatgaaactttgaaatatataagggaaccaggat 3926
Query: 688 ccacgacatatagaagactnataagt-aaccaccgatgtactcagatcgacatggtataa 746
|||||||| | ||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 3925 ccacgacaaaaagaagac-aataagtaaaccaccgatgtactcagatcgacatggtataa 3867
Query: 747 cttcatcaaataacagggtttggaaatgacatgattgaactgtttacaagtcatagaagt 806
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 3866 cttcatcaaataaca-ggtttggaaatgacatgattgaactgtttacaagtcaaagaagt 3808
Query: 807 ctactctggtgattcatcatcatactaatgaaaattgatcatgtgacctagcttcatcag 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3807 ctactctggtgattcatcatcatactaatgaaaattgatcatgtgacctagcttcatcag 3748
Query: 867 atttctttcccgcctaacacttttta 892
||||||||||||| || ||||||||
Sbjct: 3747 atttctttcccgcttacaacttttta 3722
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6614
Number of Sequences: 1807
Number of extensions: 6614
Number of successful extensions: 37
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)