BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZE12RM1.SCF screened BAC_end
(950 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 896 0.0
3x_Contig1549 446 e-125
>3x_Contig1728
Length = 20685
Score = 896 bits (452), Expect = 0.0
Identities = 471/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Minus
Query: 48 tgacttagcacgaagattataatgtctagaacgtttttcttcctcaggaatgtgattctc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 tgacttagcacgaagattataatgtctagaacgtttttcttcctcaggaatgtgattctc 430
Query: 108 ggtgacatgtatgacatctggtcttgctttcttttcggcaggcttattccgttcattgag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ggtgacatgtatgacatctggtcttgctttcttttcggcaggcttattccgttcattgag 370
Query: 168 catactcctttttctaggtttcggttttgcttcttcttctgaagcggttcctaaaccctc 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 catactcctttttctaggtttcggttttgcttcttcttctgaagcggttcctaaaccctc 310
Query: 228 ctcatcctcatatttcattatcgtttcaagatcattctttgcgtccttgacgtagttgat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctcatcctcatatttcattatcgtttcaagatcattctttgcgtccttgacgtagttgat 250
Query: 288 tatatccttgaaatcgtccttgccatacattttctgaagatgggtcgttgatttcgttag 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tatatccttgaaatcgtccttgccatacattttctgaagatgggtcgttgatttcgttag 190
Query: 348 ggcggattcttcagctaccgaggttgccttcggcgtgtctttcgtaatttttttgtcatt 407
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 189 ggcggattcttcagctaccgaggtttcgttcggcgtgtctttcgtaatttttttgtcatt 130
Query: 408 atgttgtaagggtatcggcgaagccaaatagctatcctttggagttttctttaactcttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 atgttgtaagggtatcggcgaagccaaatagctatcctttggagttttctttaactcttt 70
Query: 468 gaacttcgctaggatctctggatcctgcttttcatccggaagtataacctggttac 523
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 69 gaacttcgcttagatctct-gatcctgcttttcatccggaagtataacctggttac 15
>3x_Contig1549
Length = 13677
Score = 446 bits (225), Expect = e-125
Identities = 336/364 (92%), Gaps = 8/364 (2%)
Strand = Plus / Minus
Query: 496 ttttcatccggaagtataacctggttactgagcaccgctaagggttgtgactgatagtgg 555
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13677 ttttcacccggaagtataacctggttactgagcaccgctaagggttgtgactgatagtgg 13618
Query: 556 agaaaatgttttagcctcatatgattgacaataccttgcgcagatgtgaaaccttccctt 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13617 agaaaatgttttagcctcatatgattgacaataccttgcgcagatgtgaaaccttccctt 13558
Query: 616 ccacattgagagcatgtaattattatgagtattccatcaagtcttctg-atataagctga 674
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct: 13557 ccacattgagagcatgtaattattatgagtattccatcaggtcttctgaatataggctga 13498
Query: 675 cccaagtcagtggttccgatcataccactgttgctagtaccgcatgtgctacgntg-agt 733
||||||||||||| ||||||||||||||||||||||||| |||||||||||| || |||
Sbjct: 13497 cccaagtcagtgg-tccgatcataccactgttgctagtagcgcatgtgctac--tgaagt 13441
Query: 734 ttcg-tggtgattat-gtgatgcatcttcgaaattatttgctctgatttct-ttccttat 790
|||| |||||||||| |||| ||||||||||||||||| ||||||||||| | ||| |
Sbjct: 13440 ttcgttggtgattatggtgaggcatcttcgaaattattgcctctgatttctgtacctcag 13381
Query: 791 tggcttaaatttgttgagggacaatcttttttgcccgcatacgaatgttaattacgtttt 850
||||| || |||||||||| ||| ||||| | | ||||||||||||| ||| |||||||
Sbjct: 13380 tggctgaagtttgttgaggaacagtctttatgccacgcatacgaatgtcaataacgtttt 13321
Query: 851 catt 854
||||
Sbjct: 13320 catt 13317
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6792
Number of Sequences: 1807
Number of extensions: 6792
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 2
length of query: 950
length of database: 10,358,551
effective HSP length: 16
effective length of query: 934
effective length of database: 10,329,639
effective search space: 9647882826
effective search space used: 9647882826
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)