BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF01FM1.SCF screened BAC_end
(925 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1198 1501 0.0
>3x_Contig1198
Length = 5263
Score = 1501 bits (757), Expect = 0.0
Identities = 824/839 (98%), Gaps = 6/839 (0%)
Strand = Plus / Plus
Query: 86 ttatgaattttattggtaatctggactcagcagagttatcaaatattctacagacccttt 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 103 ttatgaattttattggtaatctggactcagcagagttatcaaatattctacagacccttt 162
Query: 146 taacgcgttggtcaactctcgtcgattcatcattcggaaataagaacatatcacacctga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 163 taacgcgttggtcaactctcgtcgattcatcattcggaaataagaacatatcacacctga 222
Query: 206 tcgaaaaactacttcaaaatcacatcgatattttgcctgtgctattcgctgaagaggatt 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 tcgaaaaactacttcaaaatcacatcgatattttgcctgtgctattcgctgaagaggatt 282
Query: 266 tttttgaagagtctaacattgttcgttcgatagtggttcacttgacagccgatgttaatt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tttttgaagagtctaacattgttcgttcgatagtggttcacttgacagccgatgttaatt 342
Query: 326 ctaaccttcatctgaagtatttattggaaattccaattcaatgtttgaataaggctgtaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ctaaccttcatctgaagtatttattggaaattccaattcaatgtttgaataaggctgtaa 402
Query: 386 gattggcaatcctagaccaaataatagagaaggatgttttgaaagaggatgacataaatg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 gattggcaatcctagaccaaataatagagaaggatgttttgaaagaggatgacataaatg 462
Query: 446 ttctttgtcatgttttgaaaaaccctacctcgaggagcaaaatagaaaccgattataaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 ttctttgtcatgttttgaaaaaccctacctcgaggagcaaaatagaaaccgattataaaa 522
Query: 506 caatgctcacgtttgtcggcaattcattcttcaaatatagcttggaaaatccggttattg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 caatgctcacgtttgtcggcaattcattcttcaaatatagcttggaaaatccggttattg 582
Query: 566 cagccgtttggcagagtgcactgcttcaaagaaacgacaacaaagcatcttcatccatgg 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 cagccgtttggcagagtgcactgcttcaaagaaacgacaacaaagcatcttcatccatgg 642
Query: 626 attctctattacaaagcattcaggcaaatttgaatcatacctttgattataacacttatg 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 attctctattacaaagcattcaggcaaatttgaatcatacctttgattataacacttatg 702
Query: 686 ccttgttgcatctggtactcaaaacatgcgatgaatcagggttgcatttagatgctctta 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ccttgttgcatctggtactcaaaacatgcgatgaatcagggttgcatttagatgctctta 762
Query: 746 aggttaagttcatcaatagtttganttacaatattcagcatttcaacggagatttcaaat 805
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 763 aggttaagttcatcaatagtttgatttacaatattcagcatttcaacggagatttcaaat 822
Query: 806 tacttgcatggctgctcaaagttttgttca-tcaagcaagtnactcttaaaacac-attt 863
||||||||||||||||||| |||||||||| |||||||||| ||||| ||| || |||
Sbjct: 823 tacttgcatggctgctcaaggttttgttcattcaagcaagtaactctaaaacaacaattc 882
Query: 864 ctgtt-caccgttattttcg-aggcatccgcc-ttccctctgac-ttggagttcaatcg 918
||||| |||||||||||||| ||||||||||| |||| |||||| ||| ||||||||||
Sbjct: 883 ctgttccaccgttattttcgaaggcatccgccattccttctgacattgaagttcaatcg 941
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6884
Number of Sequences: 1807
Number of extensions: 6884
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 925
length of database: 10,358,551
effective HSP length: 16
effective length of query: 909
effective length of database: 10,329,639
effective search space: 9389641851
effective search space used: 9389641851
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)