BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF01RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1009 1372 0.0
>3x_Contig1009
Length = 4650
Score = 1372 bits (692), Expect = 0.0
Identities = 765/785 (97%), Gaps = 4/785 (0%)
Strand = Plus / Minus
Query: 44 cttgtctcttgaatatcgtactggtcatcatctcgtaataggtgtatatgtatatagttt 103
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1604 cttgtctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagttt 1545
Query: 104 gagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaata 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1544 gagttttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaata 1485
Query: 164 taaaatatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttata 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1484 taaaatatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttata 1425
Query: 224 tataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatatt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1424 tataaaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatatt 1365
Query: 284 aatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagat 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1364 aatctcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagat 1305
Query: 344 aacgaggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagtttt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1304 aacgaggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagtttt 1245
Query: 404 aaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1244 aaggtacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaat 1185
Query: 464 tttttgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcg 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1184 tttttgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcg 1125
Query: 524 aaatcttgagtgtgtggactgagaaacggtgaaatanatgtggtctgactaagtgtcatt 583
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1124 aaatcttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcatt 1065
Query: 584 gtgaacgacgccgacacatagggctgtgccggggccctgtacnncttttcacacagtagt 643
|||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||
Sbjct: 1064 gtgaacgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagtagt 1005
Query: 644 aataataat-aacattagcttcggtgatgttt-acggcataaactgtaaactattgttat 701
||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1004 aataataataaacattagcttcggtgatgtttaacggcataaactgtaaactattggtat 945
Query: 702 gccggtccgtatgtagtgcatttttgcaacacgtaaactgggaaggagctaaattgattt 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 944 gccggtccgtatgtagtgcatttttgcaacacgtaaactgggaaggagctaaattgattt 885
Query: 762 ttttaa-tgaattctcaaatttagggttgc-gtttacgcgtttgtttaccgtttttgacc 819
||| || ||| |||||||||||| || ||| |||||||||||||||||| ||||||||
Sbjct: 884 tttaaattgatttctcaaatttaagggtgcggtttacgcgtttgtttacgttttttgacg 825
Query: 820 tttac 824
|||||
Sbjct: 824 tttac 820
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7640
Number of Sequences: 1807
Number of extensions: 7640
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)