BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC38ZF02FM1.SCF screened BAC_end (932 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig969 458 e-128 3x_Contig928 170 3e-42 >3x_Contig969 Length = 3546 Score = 458 bits (231), Expect = e-128 Identities = 257/262 (98%), Gaps = 3/262 (1%) Strand = Plus / Minus Query: 673 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3510 tctcttgtcacagatagcagaaacaccacaaacagtcaatcttgcagctcttgttccgac 3451 Query: 733 caattcggctaattttctaatcaactttctctcaacaacggtagtttcgatgttcaagtt 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3450 caattcggctaattttctaatcaactttctctcaacaacggtagtttcgatgttcaagtt 3391 Query: 793 agtcttgaacagatcgtcagtgtcttcc-agttttcgaatggatcatcttcgatcttaga 851 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 3390 agtcttgaacagatcgtcagtgtcttccaagttttcgaatggatcatcttcgatcttaga 3331 Query: 852 tggataactggtgtncatgacgtaagcctctttcaacttggagatatc-tggtcctt-aa 909 |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 3330 tggataactggtgtccatgacgtaagcctctttcaacttggagatatcttggtccttaaa 3271 Query: 910 gatggaaccactgtcgtacaag 931 |||| ||||||||||||||||| Sbjct: 3270 gatgaaaccactgtcgtacaag 3249 >3x_Contig928 Length = 1948 Score = 170 bits (86), Expect = 3e-42 Identities = 144/154 (93%), Gaps = 7/154 (4%) Strand = Plus / Minus Query: 89 atagttttaaaataactagtgccatattatccaaactggacataagcataactaatatta 148 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 147 atagttttaaaataactagtgccatattatcc-aactggacataagcataactaatatta 89 Query: 149 ttaagatttaaatttgaaatatattcatatttgtacattaacacataagttagtttacat 208 || |||||| | ||||||||||| || |||||||||| ||||||||||||||| |||||| Sbjct: 88 ttcagattt-actttgaaatata-tcctatttgtaca-taacacataagttag-ttacat 33 Query: 209 ttgcgaagaacaatctgttccggcctacatatat 242 ||||| ||||||||||||||||||| |||||||| Sbjct: 32 ttgcg-agaacaatctgttccggcc-acatatat 1 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7189 Number of Sequences: 1807 Number of extensions: 7189 Number of successful extensions: 56 Number of sequences better than 1.0e-20: 2 length of query: 932 length of database: 10,358,551 effective HSP length: 16 effective length of query: 916 effective length of database: 10,329,639 effective search space: 9461949324 effective search space used: 9461949324 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)