BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF02RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig672 1334 0.0
>3x_Contig672
Length = 2319
Score = 1334 bits (673), Expect = 0.0
Identities = 813/851 (95%), Gaps = 9/851 (1%)
Strand = Plus / Plus
Query: 44 cttcggtgacgattctactgacggtacgtccatgttaacgtccccatcttcatctttcat 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 cttcggtgacgattctactgacggtacgtccatgttaacgtccccatcttcatctttcat 1449
Query: 104 ttcatgtgaatcagatacgccttcattgaccacagtggtagttttttcat-aacattctg 162
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1450 ttcatgtgaatcagatacgccttcattgaccacagtggtagttttttcatcaacattctg 1509
Query: 163 aatagcgctgtcatcattatcttcttcttgaatagcgttattacttttagaactgttttc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 aatagcgctgtcatcattatcttcttcttgaatagcgttattacttttagaactgttttc 1569
Query: 223 tcgagaaatttcctcgaggagtgtctcttcatgtatgtctgcaaatttggtaccagtacc 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 tcgagaaatttcctcgaggagtgtctcttcatgtatgtctgcaaatttggtaccagtacc 1629
Query: 283 tctctgttgcaacatcagtggaataaactgctcaagcggcatctgaccaaagtactcata 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 tctctgttgcaacatcagtggaataaactgctcaagcggcatctgaccaaagtactcata 1689
Query: 343 cgggttctgaattaatgatttttgcgactttgcattatcagcatcgtcagctgcaaatac 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 cgggttctgaattaatgatttttgcgactttgcattatcagcatcgtcagctgcaaatac 1749
Query: 403 tgtggcatcttcattgttaacaccttcgtcaccgttaccattagtcgttaatgaagtaga 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1750 tgtggcatcttcattgttaacaccttcgtcaccgttaccattagtcgttaatgaagtaga 1809
Query: 463 caccggaatactaattaaattaggatcaattgccaagggtatacccttttcagggtcata 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1810 caccggaatactaattaaattaggatcaattgccaagggtatacccttttcagggtcata 1869
Query: 523 ttctgagaagccatccatttaacactcgaatgtacttcacttttgcagttccaaattttc 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1870 ttctgagaagccatccatttaacactcgaatgtacttcacttttgcagttccaaattttc 1929
Query: 583 gtagtaattactcctggttatatctttatattcagattcatcctttcactgttttctatc 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1930 gtagtaattactcctggttatatctttatattcagattcatcctttcactgttttctatc 1989
Query: 643 gagtatcttgntgnccttttgttg-agntaacattggaatttctttttcatgttaaagaa 701
|||||||||| || ||||||||| || ||||||| ||||||| ||||||||| ||||||
Sbjct: 1990 gagtatcttgttgt-cttttgttgaagttaacatt-gaatttcattttcatgtcaaagaa 2047
Query: 702 aacaaggacaggatcgggaagaaaaagacgttagtatggattgcatcanagtacatgctc 761
|||| | |||| | || ||||||||||||| ||||||||| |||||| |||||||||||
Sbjct: 2048 aacaggaacagaacgggaaagaaaaagacgtaagtatggatggcatcagagtacatgctc 2107
Query: 762 aaagaaaagctgggtgtaaaaggattgagaagccttgccgtttntgaagtccgaatggat 821
|||| |||||| |||||||||||||||||||| |||| ||||| |||||| ||||| |||
Sbjct: 2108 aaaggaaagcttggtgtaaaaggattgagaag-cttggcgtttttgaagtacgaat-gat 2165
Query: 822 taattaacttttccatttattttatagtttaaccaacctttttaacgaaccctaactgac 881
||||||||| | | |||||||| ||||| | | || |||| ||||||||||||||||
Sbjct: 2166 taattaactatacaatttatttagtagttca--ccacacttttcacgaaccctaactgac 2223
Query: 882 ttagattacat 892
||||||||||
Sbjct: 2224 -tagattacat 2233
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7746
Number of Sequences: 1807
Number of extensions: 7746
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)