BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF03RM1.SCF screened BAC_end
(963 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1426 1205 0.0
>3x_Contig1426
Length = 8319
Score = 1205 bits (608), Expect = 0.0
Identities = 684/706 (96%), Gaps = 3/706 (0%)
Strand = Plus / Plus
Query: 45 aatacattgctgaaggggttggggccgaaagtattatccgttccatcaaaacaaagtatt 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7051 aatacattgctgaaggggttggggccgaaagtattatccgttccatcaaaacaaagtatt 7110
Query: 105 atatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatttcta 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7111 atatttttactggtggtactctgaccagtgcccaaagaggatgatgccattgaatttcta 7170
Query: 165 agaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtctcga 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7171 agaaaagcatagaagagctatgctattttttttggcacttttttcggcttgatgtctcga 7230
Query: 225 aatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattacat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7231 aatactaggtttatatacagaagctgctcgagctggtgtatcgagcgccacatattacat 7290
Query: 285 ccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtta 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7291 ccaatgctgtatgatcttttgtgtcagtggcatcaaaaagaaaaaaaatatctttcgtta 7350
Query: 345 cccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatagaaga 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7351 cccgcatttgtgacagaaatttcactcaatctgaatgaggaagccagcatagatagaaga 7410
Query: 405 gaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatntaagt 464
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 7411 gaattcaagggtgctacaaaggtaaatgtttaatcggtatctctattagctgatttaagt 7470
Query: 465 acccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacgt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7471 acccaaactttctttaacttatcaaatactgcgacatcttttaagattttccgaacacgt 7530
Query: 525 tctacgtcggttgagtttgttagctgtaatccgactct-atcactagatctgctgatttg 583
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 7531 tctacgtcggttgagtttgttagctgtaatccgactctaatcactagatctgctgatttg 7590
Query: 584 ctcgc-aaccctggtgactgagatagatatttttcaatggacgctttgaataccntcgcg 642
||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct: 7591 ctcgcaaaccctggtgactgagatagatatttttcaatggacgctttgagtacctcggcg 7650
Query: 643 ctctttctggccctctgtgtagcatctgattgaatgtcctctcttttaatttttctccgt 702
||||| | || |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 7651 ctcttctcgtccttctgtgtagcatctgattgaatgtcctctcttttaattttctcccgc 7710
Query: 703 tttaacttttccgggtt-aattttcttgcaaacttgctggcatttg 747
| |||| | ||| |||| ||||||||||||||||||||| ||||||
Sbjct: 7711 tctaacgtatcccggttcaattttcttgcaaacttgctgtcatttg 7756
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 15,891
Number of Sequences: 1807
Number of extensions: 15891
Number of successful extensions: 147
Number of sequences better than 1.0e-20: 1
length of query: 963
length of database: 10,358,551
effective HSP length: 16
effective length of query: 947
effective length of database: 10,329,639
effective search space: 9782168133
effective search space used: 9782168133
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)