BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF04FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig661 1118 0.0
3x_Contig203 434 e-121
>3x_Contig661
Length = 2026
Score = 1118 bits (564), Expect = 0.0
Identities = 564/564 (100%)
Strand = Plus / Plus
Query: 87 ttatctcaaggaagacaaaagcatcatgctagcttcaggaataccagtagcgttggttcc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1463 ttatctcaaggaagacaaaagcatcatgctagcttcaggaataccagtagcgttggttcc 1522
Query: 147 taacaaaaatttgctgtatgattttaaagatgaatccaaaactaaattgcttgcagcagg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1523 taacaaaaatttgctgtatgattttaaagatgaatccaaaactaaattgcttgcagcagg 1582
Query: 207 aatgaaagaaatttctgttgagggagaaggtatcctaaacattaaaatgaatgacaaaat 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1583 aatgaaagaaatttctgttgagggagaaggtatcctaaacattaaaatgaatgacaaaat 1642
Query: 267 cacaataaaaatgcgagcggtgtttgttccgtcagtcaacatggttatgattccattaca 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1643 cacaataaaaatgcgagcggtgtttgttccgtcagtcaacatggttatgattccattaca 1702
Query: 327 gtccttttataagaataacctctatgttgctagaaaccataaacatatcgtgaattccct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1703 gtccttttataagaataacctctatgttgctagaaaccataaacatatcgtgaattccct 1762
Query: 387 agatgatgaaaagttagcgtctatctacataaaagataagttatggcggatctcaagtga 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1763 agatgatgaaaagttagcgtctatctacataaaagataagttatggcggatctcaagtga 1822
Query: 447 tcacattcagttaccgaacaaacatcatcatgtaaagaaagtcaagacatccaagaaata 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1823 tcacattcagttaccgaacaaacatcatcatgtaaagaaagtcaagacatccaagaaata 1882
Query: 507 aaagtgacattaagagatttacgcaggtgtattagagaaaccgttaagaaaggcgaaatt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1883 aaagtgacattaagagatttacgcaggtgtattagagaaaccgttaagaaaggcgaaatt 1942
Query: 567 ggggacttatcaatatctgctgatcattggaagggcattgacagttttcaatgttaatca 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1943 ggggacttatcaatatctgctgatcattggaagggcattgacagttttcaatgttaatca 2002
Query: 627 tgtgtgaaaggtagaacctcaaga 650
||||||||||||||||||||||||
Sbjct: 2003 tgtgtgaaaggtagaacctcaaga 2026
>3x_Contig203
Length = 982
Score = 434 bits (219), Expect = e-121
Identities = 289/304 (95%), Gaps = 7/304 (2%)
Strand = Plus / Plus
Query: 645 tcaagacattagtaccgggtctgttgagacanattagaaaaattaatctagtaactacca 704
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tcaagacattagtaccgggtctgttgagacaaattagaaaaattaatctagtaactacca 60
Query: 705 atgtgataggatttacttatcaagatgatacatagggggatctt-aaacgtgaaacatga 763
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 61 atgtgataggatttacttatcaagatgatacata-ggggatcttaaaacgtgaaacatga 119
Query: 764 atggatcacttgtgtagctggctttaacgatcatgaatggacatacatacattattttct 823
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 120 atggatcacttgtgtagctggctttaacgatcatgaatggacatacatacatta-tttct 178
Query: 824 gtttgacgtttatacgttatttatatatacctatgaaacgcgtctacatgaactacagaa 883
|||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 179 gtttgacgttaatacg-tatttatatatacctatg-aacgcgtctacatgaactacag-a 235
Query: 884 tatggggtgagaggatgactctttactcantatggggcaantgttctgtaaaatttgatg 943
||||||||||||||||||||| |||||| ||||| || | ||||||||| |||||||||
Sbjct: 236 gatggggtgagaggatgactctctactcagtatggtgc-agtgttctgtagaatttgatg 294
Query: 944 gagt 947
||||
Sbjct: 295 gagt 298
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6610
Number of Sequences: 1807
Number of extensions: 6610
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 2
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)