BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF04RM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig826 1237 0.0
>3x_Contig826
Length = 2477
Score = 1237 bits (624), Expect = 0.0
Identities = 709/734 (96%), Gaps = 3/734 (0%)
Strand = Plus / Minus
Query: 81 tgttaggatgcttaagtgctggtaagaacatcttactagcacatagcatatagattacgt 140
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2477 tgttagnatgcttaagtgctggtaagaacatcttactagcacatagcatatagattacgt 2418
Query: 141 agttttaaataacttgagaaaacgaagatgacagagaaggttgaaaaaatagagatgtgt 200
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 2417 agttttaaataacttgaganaacgaagatgacagagaaggttgaaaaaatagagatgtgt 2358
Query: 201 gagaagagagtcggtcaaccagtcaaatgaaatattaatagtacatctttagcctacctt 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2357 gagaagagagtcggtcaaccagtcaaatgaaatattaatagtacatctttagcctacctt 2298
Query: 261 gaatgctggtgtgagattagtagtagtagtgttaccagcggtagttgggtcaatggcagt 320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2297 gaatgctggtgtgagattagtagtagtagtgttaccagcggtagttgggtcaatggcagt 2238
Query: 321 tccagtcagggaacttttcgatgagtcggatccgatgctgttcgagacaggactaaggtt 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2237 tccagtcagggaacttttcgatgagtcggatccgatgctgttcgagacaggactaaggtt 2178
Query: 381 gagcgatgagctggacgtggatcctccagggttcattgactggccggattgcgatgttat 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2177 gagcgatgagctggacgtggatcctccagggttcattgactggccggattgcgatgttat 2118
Query: 441 actgcctctgcctccgcctgcagctctaccgctgtacatgggattgaagttcatattcat 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2117 actgcctctgcctccgcctgcagctctaccgctgtacatgggattgaagttcatattcat 2058
Query: 501 gatcatgttatttgtgaaggatccaccaggggtggtaacgttcgatgatgctgaaagtgg 560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2057 gatcatgttatttgtgaaggatccaccaggggtggtaacgttcgatgatgctgaaagtgg 1998
Query: 561 tggtggtggtggaggcacgggtaaataagccattggttgagttggtgaaacgttgctagt 620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1997 tggtggtggtggaggcacgggtaaataagccattggttgagttggtgaaacgttgctagt 1938
Query: 621 tttatcggtggtatgttgttgcagttgtctcaactgcggcggttgagttgccgaaattgg 680
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1937 tttatcggtggtatgttgttgcagttgtctcaactgcggcggttgagttgcggaaattgg 1878
Query: 681 tgggcagctaccgctgatcggttgctgccgcatatattaacgtgggagatggtgtgtaac 740
||| |||||| |||||||||||||||| ||||| || | ||||||||||||||||||
Sbjct: 1877 tggcaagctacggctgatcggttgctgcggcatagataacggtgggagatggtgtgtaaa 1818
Query: 741 cgtaagttatttcaagtggttcctgttgtgggctgattccaggaatctgttggaactttt 800
|| |||| ||||| ||| ||||||| ||||||||||||| ||||| || ||| |||
Sbjct: 1817 cggtagtttattcaaagtgttactgttgt-ggctgattccagg-atctgctgaaac-ttt 1761
Query: 801 cgggtacatttcct 814
||||||||||||||
Sbjct: 1760 cgggtacatttcct 1747
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5726
Number of Sequences: 1807
Number of extensions: 5726
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)