BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC38ZF05RM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1641                                                        1326   0.0  

>3x_Contig1641 
          Length = 13261

 Score = 1326 bits (669), Expect = 0.0
 Identities = 719/729 (98%), Gaps = 5/729 (0%)
 Strand = Plus / Plus

                                                                         
Query: 43    cttaatggaatgtctcgattcttcc-gtgaagatccggtaatcagcagcttatccacatt 101
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 10160 cttaatggaatgtctcgattcttccagtgaagatccggtaatcagcagcttatccacatt 10219

                                                                         
Query: 102   agtcaatctacaacggttcaatatattggataaatccgtctcgtgctgcttcttgccatg 161
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10220 agtcaatctacaacggttcaatatattggataaatccgtctcgtgctgcttcttgccatg 10279

                                                                         
Query: 162   gtatttccctttgaacatgtgatcagagatattgaacccaatgtcaaagtaccttatctg 221
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10280 gtatttccctttgaacatgtgatcagagatattgaacccaatgtcaaagtaccttatctg 10339

                                                                         
Query: 222   tttcaaacctgtcatcttctgaagtgctctggacatatacagtgtagaagctgtttcaca 281
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10340 tttcaaacctgtcatcttctgaagtgctctggacatatacagtgtagaagctgtttcaca 10399

                                                                         
Query: 282   gtgatatacaatggccataatgaaccgaaaatatgccaaacaaacaggaagtccttttat 341
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10400 gtgatatacaatggccataatgaaccgaaaatatgccaaacaaacaggaagtccttttat 10459

                                                                         
Query: 342   cgttctgaagtgggatgagttgcatatcctcttgcgcatcgtgagatggcttgtacagaa 401
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10460 cgttctgaagtgggatgagttgcatatcctcttgcgcatcgtgagatggcttgtacagaa 10519

                                                                         
Query: 402   ttttcgagtgttacccggatgtaaggttaagctccactctgtgactcaagtccgcatgga 461
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10520 ttttcgagtgttacccggatgtaaggttaagctccactctgtgactcaagtccgcatgga 10579

                                                                         
Query: 462   aacattcacagaccgtacatgccacacgatgtccaaaaatatcgtgtaatgggtatcttc 521
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10580 aacattcacagaccgtacatgccacacgatgtccaaaaatatcgtgtaatgggtatcttc 10639

                                                                         
Query: 522   cgaagcctatccaatggcctaccaacgcacttatcacctcccggagtgcatccccctacc 581
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10640 cgaagcctatccaatggcctaccaacgcacttatcacctcccggagtgcatccccctacc 10699

                                                                         
Query: 582   tcccataagctta-tttgacacattctacacactactgcaatagctttccgaaggcgtag 640
             ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10700 tcccataagcttattttgacacattctacacactactgcaatagctttccgaaggcgtag 10759

                                                                         
Query: 641   actaacgcaccagttccaaaccatcc-gggaaccccatttgcaagaagttcacagacgaa 699
             |||||||||||||| |||||||| || |||||||||||||||||||||| ||||||||||
Sbjct: 10760 actaacgcaccagtcccaaaccaaccggggaaccccatttgcaagaagtacacagacgaa 10819

                                                                         
Query: 700   aaaaacaaaaaatgacacgtgaacggttaagattcaggaccctcactcagtatactcacc 759
             |||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct: 10820 aaaaacaaaaaaagacacgtgaacgg-taagatacaggaccctcactcagtatactca-c 10877

                      
Query: 760   atcacatct 768
             |||||||||
Sbjct: 10878 atcacatct 10886


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,894
Number of Sequences: 1807
Number of extensions: 13894
Number of successful extensions: 200
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)