BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF06FM1.SCF screened BAC_end
(967 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1739 1637 0.0
>3x_Contig1739
Length = 22061
Score = 1637 bits (826), Expect = 0.0
Identities = 870/878 (99%), Gaps = 5/878 (0%)
Strand = Plus / Plus
Query: 86 tcgaccaactcgatggatttatcctcaaccatcagttggttcatcacatgagaataataa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9878 tcgaccaactcgatggatttatcctcaaccatcagttggttcatcacatgagaataataa 9937
Query: 146 ggatccacgttaggtctcaatgggacaactggaagatagtctatatttatgatttgactc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9938 ggatccacgttaggtctcaatgggacaactggaagatagtctatatttatgatttgactc 9997
Query: 206 caatttttgatcacattgcgggccttgatatttatatcggtgtctaaatctggcaacctg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9998 caatttttgatcacattgcgggccttgatatttatatcggtgtctaaatctggcaacctg 10057
Query: 266 ccaccgaatatatccagttggttgattggtccctcgtatgataacaaatcacgtattaac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10058 ccaccgaatatatccagttggttgattggtccctcgtatgataacaaatcacgtattaac 10117
Query: 326 ataagatttgtgttttcattcatccataggaaacaagattcaccttggaaaattaggtaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10118 ataagatttgtgttttcattcatccataggaaacaagattcaccttggaaaattaggtaa 10177
Query: 386 cagccaccatttatcaattgccgatgactagaacgtactgataaggtttctatattattg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10178 cagccaccatttatcaattgccgatgactagaacgtactgataaggtttctatattattg 10237
Query: 446 aattgcaagagttgcattttatcatcgtagaaactcaaatcgtcttcgttcaaggaatca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10238 aattgcaagagttgcattttatcatcgtagaaactcaaatcgtcttcgttcaaggaatca 10297
Query: 506 tgcaatgggataatctgtggataaagcttgtatgaaagttgcgaagctccatagaagaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10298 tgcaatgggataatctgtggataaagcttgtatgaaagttgcgaagctccatagaagaga 10357
Query: 566 agtttgtaataatcatagaatctctcattacctcttgagctggatttgttctgtttcatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10358 agtttgtaataatcatagaatctctcattacctcttgagctggatttgttctgtttcatt 10417
Query: 626 aattcacttttctcaaatgctagcatgtacatgggcaaagttttcaaagaatctggtaag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10418 aattcacttttctcaaatgctagcatgtacatgggcaaagttttcaaagaatctggtaag 10477
Query: 686 attaattgccccccataagaaccgccacacagtgctctgtattgtgtaaagatttcaatg 745
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10478 attaattgccccccagaagaaccgccacacagtgctctgtattgtgtaaagatttcaatg 10537
Query: 746 atcttgcggtcaatgttcttcctaatttcattgaaattacagntcttccaatgtggctag 805
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 10538 atcttgcggtcaatgttcttcctaatttcattgaaattacag-tcttccaatgtggctag 10596
Query: 806 cacatctttgatcattatgctactcaccacaatctaggtttataaacttgaagacttcga 865
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 10597 cacatctttgatcattatgctactcaccac-atcttggtttataaacttgaagacttcga 10655
Query: 866 ttacgttcgagttgacagctgcattagta-taattgcacgtactttacgtacacc-tcga 923
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct: 10656 ttacgttcgagttgacagctgcattagtattaattgcacgtactttacgtacaccatcga 10715
Query: 924 tatcattatac-atagagctgcttggaagcatatatct 960
||||| ||||| ||||||||||||||||||||||||||
Sbjct: 10716 tatcagtatacaatagagctgcttggaagcatatatct 10753
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6774
Number of Sequences: 1807
Number of extensions: 6774
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 967
length of database: 10,358,551
effective HSP length: 16
effective length of query: 951
effective length of database: 10,329,639
effective search space: 9823486689
effective search space used: 9823486689
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)