BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF06RM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1718 1409 0.0
>3x_Contig1718
Length = 19496
Score = 1409 bits (711), Expect = 0.0
Identities = 843/871 (96%), Gaps = 12/871 (1%)
Strand = Plus / Plus
Query: 42 atatatgtttcgatgttttgtagatcagatattttgagcacgcatgtgtataaacaggtt 101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13713 atatatgtttcgatgttttgtagatcagatattttgagcacgcatgtgtataaacaggtt 13772
Query: 102 atcatatccacaaacttcttcataattggatatttggcctcatcgataccctcaattgga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13773 atcatatccacaaacttcttcataattggatatttggcctcatcgataccctcaattgga 13832
Query: 162 tcgaaaagcaattgtgaatatacagtgtccattaaacccatactgtcaaatacacgattc 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13833 tcgaaaagcaattgtgaatatacagtgtccattaaacccatactgtcaaatacacgattc 13892
Query: 222 acaatcatgttgtaatgatctgtgttactgtatggacgggtgaggagaatatggatagaa 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13893 acaatcatgttgtaatgatctgtgttactgtatggacgggtgaggagaatatggatagaa 13952
Query: 282 tctagtgcaatagattgggctttgggtatgtcctttgttaagcaccctaacaatgcagag 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13953 tctagtgcaatagattgggctttgggtatgtcctttgttaagcaccctaacaatgcagag 14012
Query: 342 aatacgtcattggatacaataacttcgctcaaaggccagttcaagcagctctttaaagtt 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14013 aatacgtcattggatacaataacttcgctcaaaggccagttcaagcagctctttaaagtt 14072
Query: 402 tccaacaacctaacgatgtactgggcattttccacttctaatgctgcttttaattcactg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14073 tccaacaacctaacgatgtactgggcattttccacttctaatgctgcttttaattcactg 14132
Query: 462 gtgaaaagagcaaaccaaccttctggattggatttgaacatctcccatttaccagagtac 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14133 gtgaaaagagcaaaccaaccttctggattggatttgaacatctcccatttaccagagtac 14192
Query: 522 ttgtatttcacactgaagacatccattgggcagacaatcattatgcagagcggttgaata 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14193 ttgtatttcacactgaagacatccattgggcagacaatcattatgcagagcggttgaata 14252
Query: 582 atgggcaatctcttc-acacggcaacatcttcaagtaagaacgtgtcttcg-aaagcgtt 639
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 14253 atgggcaatctcttcaacacggcaacatcttcaagtaagaacgtgtcttcgaaaagcgtt 14312
Query: 640 ct-aagattatgagaactagctctctagacgcctcattcatctgccatagttctgttagg 698
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 14313 ctaaagattatgagaactagctctctagacgcttcattcatctgccatagttctgttagg 14372
Query: 699 catctatccatatcgacccacgatttcgctagctgttcctcaagtagtttctt-cacttt 757
||||||||||||||||||||||||| |||||||||||||| ||||| ||||| ||||||
Sbjct: 14373 catctatccatatcgacccacgattcggctagctgttcctc-agtaggttcttccacttt 14431
Query: 758 tcaaccctcaccccagatcctttt-gctatttcgacccaaa-gaaagctagcttctttct 815
|| ||||||||||||||||||| |||||||||||||||| |||||||||||||| |||
Sbjct: 14432 caaagcctcaccccagatccttttcgctatttcgacccaaaggaaagctagcttctctct 14491
Query: 816 -atataccttggatcattc-gttgcaccctgttatttaattaaatgatccac-ttcttta 872
||||| |||||||||||| |||||||||||| |||| || |||||||||| ||||| |
Sbjct: 14492 aatatatcttggatcattcggttgcaccctgtagtttagttcaatgatccactttcttaa 14551
Query: 873 tgccattc-tttttctt-attataacccgac 901
|||||| | |||||||| || ||||||||||
Sbjct: 14552 tgccatccgtttttcttcatcataacccgac 14582
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6845
Number of Sequences: 1807
Number of extensions: 6845
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)