BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF08FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1777 1560 0.0
>3x_Contig1777
Length = 26319
Score = 1560 bits (787), Expect = 0.0
Identities = 836/847 (98%), Gaps = 4/847 (0%)
Strand = Plus / Plus
Query: 89 ccttgatatatttcttatggaatttgttcctatcaaattcgatgtcatggctttcgggac 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12535 ccttgatatatttcttatggaatttgttcctatcaaattcgatgtcatggctttcgggac 12594
Query: 149 aattagtccaaattaaaccatctcgagcaacggggcagcctgctgccacaaccaaacgaa 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12595 aattagtccaaattaaaccatctcgagcaacggggcagcctgctgccacaaccaaacgaa 12654
Query: 209 cagtgtacaatggatcttctggagctttattcggtagaataggaagcgatggcatggtta 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12655 cagtgtacaatggatcttctggagctttattcggtagaataggaagcgatggcatggtta 12714
Query: 269 gcacaccatggttgtaagaacaactgacttgtggctcaccattatcattcaatcttaaga 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12715 gcacaccatggttgtaagaacaactgacttgtggctcaccattatcattcaatcttaaga 12774
Query: 329 gtacagctctcatatcagtgccacgttacccttcaacctttgcactctcacaatgtttgt 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12775 gtacagctctcatatcagtgccacgttacccttcaacctttgcactctcacaatgtttgt 12834
Query: 389 ttaaaagccgaataaacgcaaacacacggataatcagatagcctagattcaaagaactta 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12835 ttaaaagccgaataaacgcaaacacacggataatcagatagcctagattcaaagaactta 12894
Query: 449 taagtactttacccataaactaacacttgtgagttgattattgagtcttctgcttgtcgt 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12895 taagtactttacccataaactaacacttgtgagttgattattgagtcttctgcttgtcgt 12954
Query: 509 tcgacataccccccctcattaattgctattggttagtatcctttaaattacacttctttg 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12955 tcgacataccccccctcattaattgctattggttagtatcctttaaattacacttctttg 13014
Query: 569 atcatttgtgcatgggcgtccctttaaagtttctatgcatcatcagggtaacgagaacga 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13015 atcatttgtgcatgggcgtccctttaaagtttctatgcatcatcagggtaacgagaacga 13074
Query: 629 gaatgtttctcgaagatcatccttgagtcaggtggtattattccccagatattaaggaaa 688
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13075 gaatgtttctcgaagatcatccttgagtcaggtggtattattccccagatattaaggaaa 13134
Query: 689 gtaaactagagctaaaccaccttttagttgattgggcattgaacaatattctaggaacac 748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13135 gtaaactagagctaaaccaccttttagttgattgggcattgaacaatattctaggaacac 13194
Query: 749 ttgtgaaatacggttttatggatatttagttattaagagtttatttattg-ttgctatga 807
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 13195 ttgtgaaatacggttttatggatatttagttattaagagttta-ttattgtttgctatga 13253
Query: 808 taaagaaaagttcgttcttgttcagtatctcaagaactaggatacccagtggttaagcct 867
|||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct: 13254 taaagaaaagttcgttcttgttcagtatctcaagaactagaataccaagtgg-taagcct 13312
Query: 868 ggtacagaatgtacagtgctatgatagtccagaatatgaatgacaacagttaggttgttg 927
||||||||||||||||||||| |||||||||||||| ||| ||| ||| ||||||||||
Sbjct: 13313 ggtacagaatgtacagtgctaggatagtccagaataggaagaacagcag-taggttgttg 13371
Query: 928 ccaccat 934
|||||||
Sbjct: 13372 ccaccat 13378
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5734
Number of Sequences: 1807
Number of extensions: 5734
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)