BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF08RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1261 1544 0.0
>3x_Contig1261
Length = 9103
Score = 1544 bits (779), Expect = 0.0
Identities = 866/889 (97%), Gaps = 5/889 (0%)
Strand = Plus / Plus
Query: 49 tcataattgatgtctcttcgatattcgctgaatgtattcgccgtgaccattatggtgaaa 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4029 tcataattgatgtctcttcgatattcgctgaatgtattcgccgtgaccattatggtgaaa 4088
Query: 109 gtatttcagtgttgttcgactcattagcttctctatagtctaagactggagtaggtctaa 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4089 gtatttcagtgttgttcgactcattagcttctctatagtctaagactggagtaggtctaa 4148
Query: 169 gagaacaaaagggcaagcaaacaaccgtcgtcctgcttccgggcaacttaaatgctgtat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4149 gagaacaaaagggcaagcaaacaaccgtcgtcctgcttccgggcaacttaaatgctgtat 4208
Query: 229 cagtaggaattgatacgaagaaaaaatacaactacactgacacctcactcctgtacatta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4209 cagtaggaattgatacgaagaaaaaatacaactacactgacacctcactcctgtacatta 4268
Query: 289 aatcgaaacaaagttacgcgcaaggtccaattagtacacacggttatgctaatttgggtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4269 aatcgaaacaaagttacgcgcaaggtccaattagtacacacggttatgctaatttgggtt 4328
Query: 349 cttcaaatattactattggaaataatcaacacaaccacagtccctttaaaaaatggtact 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4329 cttcaaatattactattggaaataatcaacacaaccacagtccctttaaaaaatggtact 4388
Query: 409 ctaaagtctaagaatgaagatgatccaatatttattaaatagagttatgtctcattttat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4389 ctaaagtctaagaatgaagatgatccaatatttattaaatagagttatgtctcattttat 4448
Query: 469 catttcattttctttcccaatcgatatcataaaatggtttttatcttctcttctatcttn 528
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4449 catttcattttctttcccaatcgatatcataaaatggtttttatcttctcttctatcttt 4508
Query: 529 tgagcaccattaaactgagctgaaagtgcagttcaaaacactgttcgcgtcgtagaaaaa 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4509 tgagcaccattaaactgagctgaaagtgcagttcaaaacactgttcgcgtcgtagaaaaa 4568
Query: 589 caattatcttaaactaactntaaagactaaccccaatgatgcactcactttggattgcaa 648
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 4569 caattatcttaaactaactttaaagactaaccccaatgatgcactcactttggattgcag 4628
Query: 649 gacttgcctcctgttgcattgttttacagtgtaacatacagagacaacgtactaacggag 708
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4629 gacttgcctcctgttgcattgttttacagtgtaacaaacagagacaacgtactaacggag 4688
Query: 709 cattggcagatcaaaacttaaaacataacctaatcctcattttctttcatttcgaaggca 768
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 4689 cattggcagatcaaaacttaaaacataacctaattctcattttctttcaattcgaaggca 4748
Query: 769 attagttcattattgtcgtcagctttatgatttacaaatgaatcggg-atatctctacca 827
|||||||||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||
Sbjct: 4749 attagttcataattgtcgtcagc-ttatgaattacaaatg-atcgggaatatctctacca 4806
Query: 828 agtttagtttgacattgtagaatatgtaaatcctgatttaacc-aatttactgtaagaat 886
|||||||||||||||||||| |||||||||| |||||||||| |||| |||||||| ||
Sbjct: 4807 ggtttagtttgacattgtagattatgtaaatcttgatttaaccaaattaactgtaag-at 4865
Query: 887 gaatttggccaaattagactcgcacgaatttttttcgcagtttcatgtg 935
||||||||||||| ||||||||||||| || || ||||| ||||||||
Sbjct: 4866 gaatttggccaaagtagactcgcacgacattcttccgcaggttcatgtg 4914
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7218
Number of Sequences: 1807
Number of extensions: 7218
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)