BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF09FM1.SCF screened BAC_end
(968 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1607 1574 0.0
>3x_Contig1607
Length = 10159
Score = 1574 bits (794), Expect = 0.0
Identities = 849/865 (98%), Gaps = 2/865 (0%)
Strand = Plus / Minus
Query: 87 taaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtgcgtg 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6492 taaaccggtattcagaataataaaggaaacagtaagtaatggcagttatttcagtgcgtg 6433
Query: 147 ggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagaggggaata 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6432 ggcttgatgccgtcgtgtctaaggatgaatcgttgggggaggaagttgtagaggggaata 6373
Query: 207 ttgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttacgatg 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6372 ttgatgcttgtaaggaatcagtgaggtctcatgagcatgatgacaatgccagttacgatg 6313
Query: 267 aaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggatttatact 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6312 aaccaccaagcttgactcatccgatggagtcacgtgttgtgaggaaaatggatttatact 6253
Query: 327 tggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacattggta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6252 tggttcccttgatgtgtatgctatatttcttgtccaatttggataagtctaacattggta 6193
Query: 387 acgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggtaact 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6192 acgctgaagtcgctggtctctctgagtctttgaatttaacaggtaaccagtacggtaact 6133
Query: 447 gtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaacttgttga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6132 gtgtgactgtgttctatgcgacgtatatcttctttgatccaattggtgctaacttgttga 6073
Query: 507 aaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgccatttctt 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6072 aaattattgggcccaagtatatgatgaccggatgtttgatttgctttggtgccatttctt 6013
Query: 567 tggggacagcttgggtaaaagattatggacatttactcttggttagagttctattgggag 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6012 tggggacagcttgggtaaaagattatggacatttactcttggttagagttctattgggag 5953
Query: 627 catttgaggccaccatttatccatcaattaacatgtatttgtcaatctgctatcgtcgtg 686
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5952 catttgaggccaccatttatccatcaattaacatgtatttgtcaatctgctatcgtcgtg 5893
Query: 687 aacagtatgcgattagattcgcatgggttttctttgctgcatgtatatcttcctcgtttg 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5892 aacagtatgcgattagattcgcatgggttttctttgctgcatgtatatcttcctcgtttg 5833
Query: 747 gtgggttgatctcgtacagttgttcaaagattaatggttctttgaatgcttggcaataca 806
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5832 gtgggttgatctcgtacggttgttcaaagattaatggttctttgaatgcttggcaataca 5773
Query: 807 tttatattgtggaaagttgtatctcacttggatttgcaccatcctatgccttgggtttgg 866
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 5772 tttatattgtggaaggttgtatctcacttggatttgcaccattctatgccttgggtttgg 5713
Query: 867 ccattaacttggaggattcttggttctggaacggcgaatgaaagacatt-tattgtggac 925
||| |||||||||||| ||||||||||||| || ||| || ||||| | ||| ||||||
Sbjct: 5712 ccaataacttggaggagtcttggttctggaccgcggaa-gagagacagtatatcgtggac 5654
Query: 926 cgntttggaacgatgtccactttca 950
|| | || |||||||||||||||||
Sbjct: 5653 cgttatgaaacgatgtccactttca 5629
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5898
Number of Sequences: 1807
Number of extensions: 5898
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 968
length of database: 10,358,551
effective HSP length: 16
effective length of query: 952
effective length of database: 10,329,639
effective search space: 9833816328
effective search space used: 9833816328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)