BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC38ZF09RM1.SCF screened BAC_end
(958 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1770 1629 0.0
>3x_Contig1770
Length = 29267
Score = 1629 bits (822), Expect = 0.0
Identities = 899/917 (98%), Gaps = 6/917 (0%)
Strand = Plus / Minus
Query: 40 cttgctgtgctgtcgcctacactctcccccgttggatactataccaaggaaattaccact 99
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14272 cttgctgtgctgtcgcctacactctcccccgttggatactataccaaggaaattaccact 14213
Query: 100 gaagatggatggcaagtaatacttaatatcacatgcattccgccaccatggaaatccagc 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14212 gaagatggatggcaagtaatacttaatatcacatgcattccgccaccatggaaatccagc 14153
Query: 160 tccattgatctgctaccatcgatactaaaaagtgatcctgagaagagttcaaagcgtttt 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14152 tccattgatctgctaccatcgatactaaaaagtgatcctgagaagagttcaaagcgtttt 14093
Query: 220 gtgcttttattggattggattaatgaggatcagtcctattggttggaagacattgaaggg 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14092 gtgcttttattggattggattaatgaggatcagtcctattggttggaagacattgaaggg 14033
Query: 280 ctgttcgtacaactaaaacaagtgtcaccagaaacaaaggctgctggatctgtcatgatg 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14032 ctgttcgtacaactaaaacaagtgtcaccagaaacaaaggctgctggatctgtcatgatg 13973
Query: 340 ttacacagtgattactgtaagcatcttgagaatacacacactaaatggtcttcaactgct 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13972 ttacacagtgattactgtaagcatcttgagaatacacacactaaatggtcttcaactgct 13913
Query: 400 atcgatttcatgcatcaaagtctaagaacgttagcccttcatcttaagataagtctttat 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13912 atcgatttcatgcatcaaagtctaagaacgttagcccttcatcttaagataagtctttat 13853
Query: 460 tcagacttgaagaacagcgtgcttgccgctaaaagtgcagtcggagtacccttgtctaca 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13852 tcagacttgaagaacagcgtgcttgccgctaaaagtgcagtcggagtacccttgtctaca 13793
Query: 520 gaagaacagaaatcactaatagatatggtaaatcttgagaatgttaacgtaacttatggc 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13792 gaagaacagaaatcactaatagatatggtaaatcttgagaatgttaacgtaacttatggc 13733
Query: 580 tctgactctttgaacaagatcgccatgattgatgagaatttcccattatccgtttataat 639
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13732 tctgactctttgaacaagatcgccatgattgatgagaatttcccattatccgtttataag 13673
Query: 640 gacaacttgtccacactaaaacacgatttttcagatgtgattcccgagatcaaaccaagg 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13672 gacaacttgtccacactaaaacacgatttttcagatgtgattcccgagatcaaaccaagg 13613
Query: 700 aatatgggatcatgtgctatcacagaacctatcaaaccgcttcctgatctacaatctctt 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13612 aatatgggatcatgtgctatcacagaacctatcaaaccgcttcctgatctacaatctctt 13553
Query: 760 atcccagatgttcaagggcagttgtcccatttatatgagttacaaagg-aaaattcttnc 818
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 13552 atcccagatgttcaagggcagttgtcccatttatatgagttacaaaggaaaaattcttcc 13493
Query: 819 cttgaaaga-tcaccaatc-accagcagtggtcccagacatcggtcaggataatacaat- 875
| ||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 13492 ttgaaaagagtcaccaatcaaccagcagtggtccaagacatcggtcaggataatacaatg 13433
Query: 876 gctttaaacgacatcgc-agtgat-attatcacttggcacatgtacccgacaatgattct 933
||||||||||||||||| |||||| || | |||||| ||||||||||||| ||||||||
Sbjct: 13432 gctttaaacgacatcgcaagtgataataaccacttgcaacatgtacccgacgatgattct 13373
Query: 934 gctctcgattcctttgt 950
|||||||||||| ||||
Sbjct: 13372 gctctcgattcccttgt 13356
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6227
Number of Sequences: 1807
Number of extensions: 6227
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)